C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stereocilin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033498 Strc 10090 - 2:121363728-121387168 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038389 Strc-001 121363728-121380940 protein_coding
  ENSMUST00000129136 Strc-004 121368403-121375031 nonsense_mediated_decay
  ENSMUST00000134443 Strc-003 121372886-121375015 processed_transcript
  ENSMUST00000149219 Strc-002 121376344-121387168 retained_intron
  ENSMUST00000150332 Strc-005 121372965-121374789 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeLiverMuscleOvaryPlacentaTestisENSMUST00000038389ENSMUST00000129136ENSMUST00000149219
Transcript ID Adipose Liver Muscle Ovary Placenta Testis
ENSMUST00000038389 0.044±0.02 0.002±0.00 0.025±0.01 0.357±0.08 0.037±0.00 0.035±0.00
ENSMUST00000129136 N/A N/A 0.144±0.00 N/A N/A N/A
ENSMUST00000149219 N/A N/A 0.020±0.00 N/A N/A 0.096±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0002 VISTA 2:121250003-121852600
CIL_000680 CIL_000680_0002 CGP 2:121310561-121363737
CIL_000683 CIL_000683_0002 CGP 2:121357714-121387168
CIL_000682 CIL_000682_0002 CGP 2:121363728-121413792

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0007605 ISO sensory perception of sound
GO:0032426 IDA stereocilium bundle tip
GO:0050910 IMP detection of mechanical stimulus involved in sensory perception of sound
GO:0060088 IMP auditory receptor cell stereocilium organization
GO:0060091 IDA kinocilium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078845 STRC stereocilin protein_coding Danio_rerio
ENSG00000242866 STRC stereocilin protein_coding Homo_sapiens

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