C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: stereocilin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428650 STRC-011 ENSG00000242866 9606 - 15:43599633-43618798 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENST00000428650
Transcript ID Liver
ENST00000428650 0.008±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000680 CIL_000680_0001 CGP 15:43533462-43604901
CIL_0007WI CIL_0007WI_0001 VISTA 15:43579049-44181693
CIL_000683 CIL_000683_0001 CGP 15:43593054-43618800
CIL_000682 CIL_000682_0001 CGP 15:43599398-43668118

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038389 Strc-001 protein_coding Mus_musculus 0 1297
ENSMUST00000149219 Strc-002 retained_intron Mus_musculus 0 931
ENSMUST00000129136 Strc-004 nonsense_mediated_decay Mus_musculus 0 580
ENSMUST00000150332 Strc-005 retained_intron Mus_musculus 0 505
ENSMUST00000134443 Strc-003 processed_transcript Mus_musculus 0 470

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