C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | stereocilin | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000450892  |
STRC-001 |
ENSG00000242866 |
9606 | - |
15:43599398-43618800  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_000680 | CIL_000680_0001 | CGP | 15:43533462-43604901 |
| CIL_0007WI | CIL_0007WI_0001 | VISTA | 15:43579049-44181693 |
| CIL_000683 | CIL_000683_0001 | CGP | 15:43593054-43618800 |
| CIL_000682 | CIL_000682_0001 | CGP | 15:43599398-43668118 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0032426 | ISS | stereocilium bundle tip |
| GO:0050910 | IEA | detection of mechanical stimulus involved in sensory perception of sound |
| GO:0060088 | ISS | auditory receptor cell stereocilium organization |
| GO:0060091 | ISS | kinocilium |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000038389
|
Strc-001 | protein_coding | Mus_musculus | 0 | 4586 |
|
ENSMUST00000149219
|
Strc-002 | retained_intron | Mus_musculus | 0 | 931 |
|
ENSMUST00000129136
|
Strc-004 | nonsense_mediated_decay | Mus_musculus | 0 | 614 |
|
ENSMUST00000134443
|
Strc-003 | processed_transcript | Mus_musculus | 0 | 466 |
|
ENSMUST00000150332
|
Strc-005 | retained_intron | Mus_musculus | 0 | 416 |
