C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cortactin binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000416 Cttnbp2 10090 - 6:18366478-18514869 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000090601 Cttnbp2-003 18366547-18514869 protein_coding
  ENSMUST00000129669 Cttnbp2-008 18435251-18513091 protein_coding
  ENSMUST00000139557 Cttnbp2-002 18431940-18514799 retained_intron
  ENSMUST00000140416 Cttnbp2-006 18501626-18514843 retained_intron
  ENSMUST00000141581 Cttnbp2-009 18389145-18408694 protein_coding
  ENSMUST00000142963 Cttnbp2-007 18448250-18502056 protein_coding
  ENSMUST00000146775 Cttnbp2-004 18366565-18434451 protein_coding
  ENSMUST00000148602 Cttnbp2-001 18366707-18514749 nonsense_mediated_decay
  ENSMUST00000149570 Cttnbp2-010 18367526-18382860 nonsense_mediated_decay
  ENSMUST00000152499 Cttnbp2-005 18366478-18428231 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090601ENSMUST00000139557ENSMUST00000140416ENSMUST00000141581ENSMUST00000146775ENSMUST00000148602ENSMUST00000149570ENSMUST00000152499
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090601 0.975±0.76 5.935±1.15 0.548±0.18 3.012±0.08 0.393±0.06 1.625±0.30 0.142±0.01 1.569±0.26 0.128±0.08 1.607±0.12 0.022±0.00 0.786±0.29 0.154±0.06 0.265±0.15
ENSMUST00000139557 0.658±0.06 2.307±0.24 N/A 3.359±0.56 0.147±0.00 0.512±0.04 0.096±0.00 0.806±0.22 0.057±0.00 0.728±0.11 0.031±0.01 0.401±0.17 0.063±0.02 0.361±0.00
ENSMUST00000140416 N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A N/A
ENSMUST00000141581 N/A N/A N/A N/A N/A N/A N/A N/A 0.097±0.00 N/A N/A N/A N/A N/A
ENSMUST00000146775 N/A N/A 0.419±0.03 8.009±0.00 N/A N/A N/A N/A N/A N/A 0.096±0.04 0.858±0.31 0.144±0.06 0.158±0.00
ENSMUST00000148602 0.348±0.00 N/A 0.282±0.00 7.750±2.26 0.110±0.00 N/A 0.108±0.00 N/A 0.050±0.04 N/A 0.064±0.04 0.504±0.20 0.098±0.06 0.411±0.16
ENSMUST00000149570 0.453±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.048±0.00 N/A N/A
ENSMUST00000152499 0.059±0.00 N/A N/A 2.894±0.48 N/A N/A N/A 0.518±0.00 0.043±0.02 N/A N/A 0.476±0.00 0.112±0.05 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U6 CIL_0005U6_0003 CGP 6:18170687-18514869
CIL_0003QX CIL_0003QX_0002 CGP 6:18366478-18855751

Gene Ontology
GO IDEvidence TypeGO Description
GO:0007420 IEA brain development
GO:0008021 IEA synaptic vesicle
GO:0017124 IEA SH3 domain binding
GO:0042995 IEA cell projection

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040991 cttnbp2 cortactin binding protein 2 protein_coding Danio_rerio
ENSG00000077063 CTTNBP2 cortactin binding protein 2 protein_coding Homo_sapiens

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