C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: latent transforming growth factor beta binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001870 Ltbp1 10090 + 17:75005568-75392512 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001927 Ltbp1-001 75005568-75391767 protein_coding
  ENSMUST00000112514 Ltbp1-007 75178911-75391326 protein_coding
  ENSMUST00000112516 Ltbp1-002 75178810-75391336 protein_coding
  ENSMUST00000127458 Ltbp1-004 75289976-75294369 retained_intron
  ENSMUST00000135447 Ltbp1-003 75178810-75348933 protein_coding
  ENSMUST00000135750 Ltbp1-005 75384210-75392512 retained_intron
  ENSMUST00000146839 Ltbp1-006 75006294-75008799 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001927ENSMUST00000112514ENSMUST00000112516
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001927 3.303±2.02 1.460±0.31 5.266±1.36 0.594±0.02 2.307±1.15 1.807±0.54 2.072±1.26 1.160±0.26 0.374±0.23 1.747±0.10 1.181±0.16 17.437±10.92 1.403±0.69 0.339±0.07
ENSMUST00000112514 4.700±2.97 1.161±0.00 7.404±2.60 1.074±0.71 2.939±1.07 3.425±0.40 3.134±0.67 2.413±0.40 0.470±0.25 6.811±1.35 0.713±0.25 37.644±25.92 2.020±1.00 0.698±0.53
ENSMUST00000112516 N/A N/A 1.265±0.00 0.657±0.00 N/A N/A N/A 1.083±0.15 0.107±0.03 2.524±0.27 N/A N/A 1.883±0.00 0.394±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TE CIL_0003TE_0003 CGP 17:74717750-75392512
CIL_0000MZ CIL_0000MZ_0002 CGP 17:75005568-75529043

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0031012 IEA extracellular matrix
GO:0050431 IEA transforming growth factor beta binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056922 ltbp1 latent transforming growth factor beta binding protein 1 protein_coding Danio_rerio
ENSG00000049323 LTBP1 latent transforming growth factor beta binding protein 1 protein_coding Homo_sapiens

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