C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003TE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000007918-ENSDARG00000056922 CGP 7955 17:22590141-22946314
GeneTranscriptPositionBiotype
ENSDARG00000056922 (ltbp1)
latent transforming growth factor beta binding protein 1 		ENSDART00000079460 (ltbp1-201) 22849583-22946314 protein_coding
ENSDART00000155145 (ltbp1-001) 22786442-22925105 protein_coding
ENSDARG00000097768 (ltbp1)
latent transforming growth factor beta binding protein 1 		ENSDART00000156572 (ltbp1-001) 22929154-22947867 protein_coding
CIL_0003TE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000018699-ENSG00000049323 CGP 9606 2:32628032-33399509
GeneTranscriptPositionBiotype
ENSG00000018699 (TTC27)
tetratricopeptide repeat domain 27 		ENST00000317907 (TTC27-001) 32628062-32821051 protein_coding
ENST00000428527 (TTC27-004) 32777882-32812615 nonsense_mediated_decay
ENST00000433416 (TTC27-003) 32736785-32787149 nonsense_mediated_decay
ENST00000438654 (TTC27-005) 32678878-32704998 protein_coding
ENST00000448773 (TTC27-006) 32628032-32640368 protein_coding
ENST00000454690 (TTC27-002) 32628156-32733921 nonsense_mediated_decay
ENSG00000049323 (LTBP1)
latent transforming growth factor beta binding protein 1 		ENST00000402934 (LTBP1-008) 33134625-33399357 protein_coding
ENST00000404525 (LTBP1-001) 33134639-33399509 protein_coding
ENST00000404816 (LTBP1-014) 32946972-33399359 protein_coding
ENST00000407925 (LTBP1-007) 33134657-33399363 protein_coding
ENST00000413303 (LTBP1-006) 33243662-33273711 protein_coding
ENST00000415140 (LTBP1-017) 33275909-33347409 protein_coding
ENST00000418533 (LTBP1-201) 33134597-33399506 protein_coding
ENST00000422669 (LTBP1-010) 33301530-33363421 protein_coding
ENST00000432635 (LTBP1-016) 33134406-33188676 protein_coding
ENST00000468091 (LTBP1-018) 33252727-33273746 protein_coding
ENST00000489740 (LTBP1-003) 33301632-33317940 processed_transcript
ENST00000498013 (LTBP1-011) 33291484-33309482 processed_transcript
ENSG00000206951 (Y_RNA)
Y RNA 		ENST00000384224 (Y_RNA.1-656) 32945339-32945451 misc_RNA
ENSG00000212204 (RNA5SP91)
RNA, 5S ribosomal pseudogene 91 		ENST00000390902 (RNA5SP91-201) 33285769-33285887 rRNA
ENSG00000223951 (AL133244.1)
 ENST00000456007 (AL133244.1-001) 33056333-33063113 processed_pseudogene
ENSG00000230876 (LINC00486)
long intergenic non-protein coding RNA 486 		ENST00000414054 (LINC00486-001) 32825443-32926693 lincRNA
ENST00000424364 (LINC00486-003) 32841014-32902123 lincRNA
ENST00000435075 (LINC00486-002) 32882801-32926522 lincRNA
ENSG00000236854 (AL121656.5)
 ENST00000440786 (AL121656.5-001) 32927127-32928405 lincRNA
ENSG00000252246 (RNA5SP92)
RNA, 5S ribosomal pseudogene 92 		ENST00000516437 (RNA5SP92-201) 33332898-33333007 rRNA
CIL_0003TE_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024078-ENSMUSG00000001870 CGP 10090 17:74717750-75392512
GeneTranscriptPositionBiotype
ENSMUSG00000001870 (Ltbp1)
latent transforming growth factor beta binding protein 1 		ENSMUST00000001927 (Ltbp1-001) 75005568-75391767 protein_coding
ENSMUST00000112514 (Ltbp1-007) 75178911-75391326 protein_coding
ENSMUST00000112516 (Ltbp1-002) 75178810-75391336 protein_coding
ENSMUST00000127458 (Ltbp1-004) 75289976-75294369 retained_intron
ENSMUST00000135447 (Ltbp1-003) 75178810-75348933 protein_coding
ENSMUST00000135750 (Ltbp1-005) 75384210-75392512 retained_intron
ENSMUST00000146839 (Ltbp1-006) 75006294-75008799 processed_transcript
ENSMUSG00000024078 (Ttc27)
tetratricopeptide repeat domain 27 		ENSMUST00000024882 (Ttc27-201) 74717750-74863570 protein_coding
ENSMUSG00000084025 (Gm6276)
predicted pseudogene 6276 		ENSMUST00000120159 (Gm6276-001) 75165207-75165785 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003TE_0001ENSDARG00000056922ENSDART00000079460ENSDART00000155145ENSDARG00000097768ENSDART00000156572CIL_0003TE_0002ENSG00000018699ENST00000317907ENST00000428527ENST00000433416ENST00000438654ENST00000448773ENST00000454690ENSG00000049323ENST00000402934ENST00000404525ENST00000404816ENST00000407925ENST00000413303ENST00000415140ENST00000418533ENST00000422669ENST00000432635ENST00000468091ENST00000489740ENST00000498013ENSG00000206951ENST00000384224ENSG00000212204ENST00000390902ENSG00000223951ENST00000456007ENSG00000230876ENST00000414054ENST00000424364ENST00000435075ENSG00000236854ENST00000440786ENSG00000252246ENST00000516437CIL_0003TE_0003ENSMUSG00000001870ENSMUST00000001927ENSMUST00000112514ENSMUST00000112516ENSMUST00000127458ENSMUST00000135447ENSMUST00000135750ENSMUST00000146839ENSMUSG00000024078ENSMUST00000024882ENSMUSG00000084025ENSMUST00000120159
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003TE_0001ENSDARG00000056922ENSDART00000079460ENSDART00000155145ENSDARG00000097768ENSDART00000156572CIL_0003TE_0002ENSG00000018699ENST00000317907ENST00000428527ENST00000433416ENST00000438654ENST00000448773ENSG00000049323ENST00000402934ENST00000404525ENST00000404816ENST00000407925ENST00000418533ENST00000422669ENSG00000206951ENST00000384224ENSG00000212204ENST00000390902ENSG00000223951ENST00000456007ENSG00000230876ENST00000414054ENST00000424364ENST00000435075ENSG00000236854ENST00000440786ENSG00000252246ENST00000516437CIL_0003TE_0003ENSMUSG00000001870ENSMUST00000001927ENSMUST00000112514ENSMUST00000112516ENSMUSG00000024078ENSMUST00000024882ENSMUSG00000084025ENSMUST00000120159
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000056922 ENSDART00000079460 N/A N/A N/A N/A N/A N/A 2.404±0.00 N/A 0.086±0.00 N/A 0.507±0.00 N/A N/A N/A
ENSDART00000155145 N/A N/A N/A 1.020±0.00 N/A N/A 1.634±1.03 0.775±0.00 0.118±0.00 N/A 0.821±0.00 N/A N/A N/A
ENSDARG00000097768 ENSDART00000156572 N/A N/A N/A 1.588±1.03 N/A N/A 3.055±2.68 0.914±0.12 0.072±0.00 N/A 3.611±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000018699 ENST00000317907 1.785±0.00 1.318±0.00 N/A 1.409±0.00 1.828±0.29 2.062±0.00 1.800±0.00 1.068±0.38 1.380±0.40 1.183±0.79 1.758±1.50 3.065±0.40 2.884±0.49 7.276±1.27
ENST00000428527 N/A N/A N/A 0.738±0.00 N/A N/A N/A N/A N/A N/A N/A 3.814±0.00 5.841±0.00 8.110±0.00
ENST00000433416 N/A N/A N/A N/A N/A 2.301±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438654 N/A N/A 4.327±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448773 N/A N/A 1.576±0.00 N/A N/A N/A N/A N/A N/A N/A 3.297±0.00 N/A N/A N/A
ENST00000454690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000049323 ENST00000402934 5.795±0.00 2.694±0.00 N/A 2.476±0.00 2.194±0.00 7.285±0.00 4.018±0.00 6.057±0.00 N/A 12.839±0.00 1.707±0.00 4.654±0.00 N/A 12.071±11.12
ENST00000404525 N/A N/A 1.837±0.00 0.544±0.00 6.358±0.00 0.592±0.00 3.044±0.78 N/A 5.424±0.00 1.363±0.00 N/A 6.407±5.97 23.280±6.89 N/A
ENST00000404816 5.892±0.00 1.545±0.00 1.562±0.00 N/A 2.124±0.00 2.380±1.45 4.352±0.87 2.166±1.44 2.366±1.15 2.105±0.55 1.176±0.00 2.270±0.00 16.099±8.94 4.463±2.64
ENST00000407925 N/A 3.864±0.00 0.804±0.00 0.741±0.06 6.256±0.00 2.407±0.71 N/A N/A 7.388±0.00 4.446±0.51 2.131±0.00 3.776±0.81 N/A 9.850±5.78
ENST00000413303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418533 N/A N/A N/A N/A 2.540±0.00 1.321±0.00 1.715±0.00 0.955±0.00 2.059±0.00 1.170±0.00 0.948±0.00 2.087±0.00 N/A N/A
ENST00000422669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.787±0.00
ENST00000432635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000206951 ENST00000384224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.652±4.19
ENSG00000212204 ENST00000390902 N/A N/A N/A 0.453±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223951 ENST00000456007 N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000230876 ENST00000414054 N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424364 N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A N/A N/A N/A 0.040±0.00 0.107±0.00
ENST00000435075 N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000236854 ENST00000440786 N/A 0.071±0.00 N/A N/A N/A N/A 0.033±0.00 N/A N/A N/A N/A 0.076±0.00 N/A 0.438±0.00
ENSG00000252246 ENST00000516437 N/A 0.934±0.00 N/A 0.490±0.00 N/A N/A N/A 1.158±0.00 36.795±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001870 ENSMUST00000001927 3.303±2.02 1.460±0.31 5.266±1.36 0.594±0.02 2.307±1.15 1.807±0.54 2.072±1.26 1.160±0.26 0.374±0.23 1.747±0.10 1.181±0.16 17.437±10.92 1.403±0.69 0.339±0.07
ENSMUST00000112514 4.700±2.97 1.161±0.00 7.404±2.60 1.074±0.71 2.939±1.07 3.425±0.40 3.134±0.67 2.413±0.40 0.470±0.25 6.811±1.35 0.713±0.25 37.644±25.92 2.020±1.00 0.698±0.53
ENSMUST00000112516 N/A N/A 1.265±0.00 0.657±0.00 N/A N/A N/A 1.083±0.15 0.107±0.03 2.524±0.27 N/A N/A 1.883±0.00 0.394±0.12
ENSMUST00000127458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000024078 ENSMUST00000024882 3.148±1.02 1.911±0.48 3.777±0.55 3.852±0.58 1.778±0.66 1.252±0.26 1.560±0.51 2.201±0.15 3.773±2.35 1.629±0.26 2.496±0.29 4.022±1.71 4.366±1.95 4.481±0.82
ENSMUSG00000084025 ENSMUST00000120159 0.185±0.02 N/A 0.037±0.00 0.050±0.00 0.279±0.00 0.159±0.00 0.122±0.04 N/A 0.029±0.01 N/A N/A 0.640±0.42 0.100±0.04 0.080±0.00

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