C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000MZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000049323-ENSG00000152689 CGP 9606 2:32946972-33564750
GeneTranscriptPositionBiotype
ENSG00000049323 (LTBP1)
latent transforming growth factor beta binding protein 1 		ENST00000402934 (LTBP1-008) 33134625-33399357 protein_coding
ENST00000404525 (LTBP1-001) 33134639-33399509 protein_coding
ENST00000404816 (LTBP1-014) 32946972-33399359 protein_coding
ENST00000407925 (LTBP1-007) 33134657-33399363 protein_coding
ENST00000413303 (LTBP1-006) 33243662-33273711 protein_coding
ENST00000415140 (LTBP1-017) 33275909-33347409 protein_coding
ENST00000418533 (LTBP1-201) 33134597-33399506 protein_coding
ENST00000422669 (LTBP1-010) 33301530-33363421 protein_coding
ENST00000432635 (LTBP1-016) 33134406-33188676 protein_coding
ENST00000468091 (LTBP1-018) 33252727-33273746 protein_coding
ENST00000489740 (LTBP1-003) 33301632-33317940 processed_transcript
ENST00000498013 (LTBP1-011) 33291484-33309482 processed_transcript
ENSG00000152689 (RASGRP3)
RAS guanyl releasing protein 3 (calcium and DAG-regulated) 		ENST00000402538 (RASGRP3-001) 33436324-33564750 protein_coding
ENST00000403687 (RASGRP3-006) 33476228-33564731 protein_coding
ENST00000407811 (RASGRP3-004) 33513875-33564605 protein_coding
ENST00000419772 (RASGRP3-019) 33527203-33539989 nonsense_mediated_decay
ENST00000423159 (RASGRP3-013) 33476649-33520656 protein_coding
ENST00000425210 (RASGRP3-008) 33476649-33516573 protein_coding
ENST00000437184 (RASGRP3-007) 33458046-33522102 protein_coding
ENST00000442390 (RASGRP3-012) 33476623-33520009 protein_coding
ENST00000444784 (RASGRP3-014) 33476649-33520653 protein_coding
ENST00000468856 (RASGRP3-005) 33531725-33540181 retained_intron
ENST00000477927 (RASGRP3-018) 33524430-33530944 processed_transcript
ENST00000479528 (RASGRP3-010) 33436567-33516693 retained_intron
ENST00000482731 (RASGRP3-020) 33539651-33543627 processed_transcript
ENST00000482857 (RASGRP3-011) 33476597-33516788 retained_intron
ENST00000484909 (RASGRP3-002) 33436326-33482936 retained_intron
ENST00000490150 (RASGRP3-017) 33527181-33539349 retained_intron
ENST00000494927 (RASGRP3-015) 33476665-33482014 retained_intron
ENST00000497723 (RASGRP3-009) 33436413-33511842 processed_transcript
ENSG00000212204 (RNA5SP91)
RNA, 5S ribosomal pseudogene 91 		ENST00000390902 (RNA5SP91-201) 33285769-33285887 rRNA
ENSG00000223951 (AL133244.1)
 ENST00000456007 (AL133244.1-001) 33056333-33063113 processed_pseudogene
ENSG00000252246 (RNA5SP92)
RNA, 5S ribosomal pseudogene 92 		ENST00000516437 (RNA5SP92-201) 33332898-33333007 rRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0000MZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000001870-ENSMUSG00000071042 CGP 10090 17:75005568-75529043
GeneTranscriptPositionBiotype
ENSMUSG00000001870 (Ltbp1)
latent transforming growth factor beta binding protein 1 		ENSMUST00000001927 (Ltbp1-001) 75005568-75391767 protein_coding
ENSMUST00000112514 (Ltbp1-007) 75178911-75391326 protein_coding
ENSMUST00000112516 (Ltbp1-002) 75178810-75391336 protein_coding
ENSMUST00000127458 (Ltbp1-004) 75289976-75294369 retained_intron
ENSMUST00000135447 (Ltbp1-003) 75178810-75348933 protein_coding
ENSMUST00000135750 (Ltbp1-005) 75384210-75392512 retained_intron
ENSMUST00000146839 (Ltbp1-006) 75006294-75008799 processed_transcript
ENSMUSG00000071042 (Rasgrp3)
RAS, guanyl releasing protein 3 		ENSMUST00000095204 (Rasgrp3-201) 75465538-75529043 protein_coding
ENSMUST00000164192 (Rasgrp3-202) 75435905-75529043 protein_coding
ENSMUSG00000084025 (Gm6276)
predicted pseudogene 6276 		ENSMUST00000120159 (Gm6276-001) 75165207-75165785 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MZ_0001ENSG00000049323ENST00000402934ENST00000404525ENST00000404816ENST00000407925ENST00000413303ENST00000415140ENST00000418533ENST00000422669ENST00000432635ENST00000468091ENST00000489740ENST00000498013ENSG00000152689ENST00000402538ENST00000403687ENST00000407811ENST00000419772ENST00000423159ENST00000425210ENST00000437184ENST00000442390ENST00000444784ENST00000468856ENST00000477927ENST00000479528ENST00000482731ENST00000482857ENST00000484909ENST00000490150ENST00000494927ENST00000497723ENSG00000212204ENST00000390902ENSG00000223951ENST00000456007ENSG00000252246ENST00000516437CIL_0000MZ_0002ENSMUSG00000001870ENSMUST00000001927ENSMUST00000112514ENSMUST00000112516ENSMUST00000127458ENSMUST00000135447ENSMUST00000135750ENSMUST00000146839ENSMUSG00000071042ENSMUST00000095204ENSMUST00000164192ENSMUSG00000084025ENSMUST00000120159
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MZ_0001ENSG00000049323ENST00000402934ENST00000404525ENST00000404816ENST00000407925ENST00000418533ENST00000422669ENSG00000152689ENST00000402538ENST00000403687ENST00000407811ENST00000425210ENST00000437184ENST00000468856ENST00000479528ENST00000484909ENSG00000212204ENST00000390902ENSG00000223951ENST00000456007ENSG00000252246ENST00000516437CIL_0000MZ_0002ENSMUSG00000001870ENSMUST00000001927ENSMUST00000112514ENSMUST00000112516ENSMUSG00000071042ENSMUST00000095204ENSMUST00000164192ENSMUSG00000084025ENSMUST00000120159
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000049323 ENST00000402934 5.795±0.00 2.694±0.00 N/A 2.476±0.00 2.194±0.00 7.285±0.00 4.018±0.00 6.057±0.00 N/A 12.839±0.00 1.707±0.00 4.654±0.00 N/A 12.071±11.12
ENST00000404525 N/A N/A 1.837±0.00 0.544±0.00 6.358±0.00 0.592±0.00 3.044±0.78 N/A 5.424±0.00 1.363±0.00 N/A 6.407±5.97 23.280±6.89 N/A
ENST00000404816 5.892±0.00 1.545±0.00 1.562±0.00 N/A 2.124±0.00 2.380±1.45 4.352±0.87 2.166±1.44 2.366±1.15 2.105±0.55 1.176±0.00 2.270±0.00 16.099±8.94 4.463±2.64
ENST00000407925 N/A 3.864±0.00 0.804±0.00 0.741±0.06 6.256±0.00 2.407±0.71 N/A N/A 7.388±0.00 4.446±0.51 2.131±0.00 3.776±0.81 N/A 9.850±5.78
ENST00000413303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418533 N/A N/A N/A N/A 2.540±0.00 1.321±0.00 1.715±0.00 0.955±0.00 2.059±0.00 1.170±0.00 0.948±0.00 2.087±0.00 N/A N/A
ENST00000422669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.787±0.00
ENST00000432635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000152689 ENST00000402538 1.279±0.00 N/A N/A N/A 0.819±0.00 0.365±0.00 1.329±0.00 N/A 0.682±0.00 1.579±0.00 N/A 0.568±0.15 1.417±0.48 0.239±0.00
ENST00000403687 N/A 1.324±0.00 N/A 1.656±0.24 0.610±0.00 N/A N/A 0.558±0.00 0.340±0.00 0.971±0.00 1.793±0.00 0.384±0.00 0.382±0.12 0.084±0.00
ENST00000407811 0.441±0.00 3.444±0.00 1.530±0.00 2.494±1.45 1.656±0.33 0.846±0.31 1.414±0.57 1.355±0.40 0.566±0.00 0.768±0.00 1.059±0.00 1.138±0.19 1.183±0.99 0.405±0.19
ENST00000419772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.974±0.00 N/A N/A N/A
ENST00000437184 N/A N/A N/A N/A N/A N/A 5.034±0.00 N/A 2.348±0.00 N/A 5.451±0.00 2.951±0.00 N/A N/A
ENST00000442390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468856 N/A N/A N/A N/A N/A N/A N/A 0.175±0.00 N/A 0.721±0.00 N/A N/A N/A 0.140±0.00
ENST00000477927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479528 N/A N/A 7.336±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484909 N/A N/A N/A N/A N/A N/A N/A 0.516±0.00 1.005±0.00 N/A N/A N/A N/A N/A
ENST00000490150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000212204 ENST00000390902 N/A N/A N/A 0.453±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223951 ENST00000456007 N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000252246 ENST00000516437 N/A 0.934±0.00 N/A 0.490±0.00 N/A N/A N/A 1.158±0.00 36.795±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001870 ENSMUST00000001927 3.303±2.02 1.460±0.31 5.266±1.36 0.594±0.02 2.307±1.15 1.807±0.54 2.072±1.26 1.160±0.26 0.374±0.23 1.747±0.10 1.181±0.16 17.437±10.92 1.403±0.69 0.339±0.07
ENSMUST00000112514 4.700±2.97 1.161±0.00 7.404±2.60 1.074±0.71 2.939±1.07 3.425±0.40 3.134±0.67 2.413±0.40 0.470±0.25 6.811±1.35 0.713±0.25 37.644±25.92 2.020±1.00 0.698±0.53
ENSMUST00000112516 N/A N/A 1.265±0.00 0.657±0.00 N/A N/A N/A 1.083±0.15 0.107±0.03 2.524±0.27 N/A N/A 1.883±0.00 0.394±0.12
ENSMUST00000127458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000071042 ENSMUST00000095204 1.617±0.34 1.150±0.00 0.295±0.00 0.345±0.15 2.096±0.64 0.652±0.19 0.940±0.10 0.863±0.32 0.184±0.00 1.894±0.32 1.151±0.00 1.203±0.70 N/A 0.176±0.00
ENSMUST00000164192 2.007±0.73 2.083±0.46 1.010±0.03 1.151±0.05 2.950±1.72 0.830±0.00 3.273±0.34 2.296±0.32 0.909±0.32 9.264±1.50 4.670±1.35 1.506±0.89 2.496±0.86 0.116±0.05
ENSMUSG00000084025 ENSMUST00000120159 0.185±0.02 N/A 0.037±0.00 0.050±0.00 0.279±0.00 0.159±0.00 0.122±0.04 N/A 0.029±0.01 N/A N/A 0.640±0.42 0.100±0.04 0.080±0.00

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