C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: latent transforming growth factor beta binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112514 Ltbp1-007 ENSMUSG00000001870 10090 + 17:75178911-75391326 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112514
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112514 4.700±2.97 1.161±0.00 7.404±2.60 1.074±0.71 2.939±1.07 3.425±0.40 3.134±0.67 2.413±0.40 0.470±0.25 6.811±1.35 0.713±0.25 37.644±25.92 2.020±1.00 0.698±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TE CIL_0003TE_0003 CGP 17:74717750-75392512
CIL_0000MZ CIL_0000MZ_0002 CGP 17:75005568-75529043

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0007179 TAS transforming growth factor beta receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000079460 ltbp1-201 protein_coding Danio_rerio 4e-23 115
ENSDART00000155145 ltbp1-001 protein_coding Danio_rerio 2e-16 94
ENST00000402934 LTBP1-008 protein_coding Homo_sapiens 0 5046
ENST00000404525 LTBP1-001 protein_coding Homo_sapiens 0 5051
ENST00000404816 LTBP1-014 protein_coding Homo_sapiens 0 3432
ENST00000407925 LTBP1-007 protein_coding Homo_sapiens 0 3432
ENST00000413303 LTBP1-006 protein_coding Homo_sapiens 0 433
ENST00000415140 LTBP1-017 protein_coding Homo_sapiens 0 763
ENST00000418533 LTBP1-201 protein_coding Homo_sapiens 0 1773
ENST00000432635 LTBP1-016 protein_coding Homo_sapiens 0 664
ENST00000468091 LTBP1-018 protein_coding Homo_sapiens 1.99965e-42 176

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