C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA methyltransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001909 Trmt1 10090 + 8:84686307-84699808 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001974 Trmt1-001 84688866-84699808 protein_coding
  ENSMUST00000077990 Trmt1-006 84689289-84692047 processed_transcript
  ENSMUST00000109767 Trmt1-002 84689247-84699787 protein_coding
  ENSMUST00000109768 Trmt1-003 84689264-84699786 protein_coding
  ENSMUST00000125370 Trmt1-018 84689464-84699785 protein_coding
  ENSMUST00000127915 Trmt1-008 84689283-84691228 retained_intron
  ENSMUST00000128022 Trmt1-014 84690389-84697131 processed_transcript
  ENSMUST00000128537 Trmt1-011 84689257-84691370 retained_intron
  ENSMUST00000131700 Trmt1-005 84689269-84696924 nonsense_mediated_decay
  ENSMUST00000136423 Trmt1-013 84698398-84699786 protein_coding
  ENSMUST00000137953 Trmt1-009 84689283-84699808 retained_intron
  ENSMUST00000138300 Trmt1-016 84696843-84697520 retained_intron
  ENSMUST00000143427 Trmt1-010 84689286-84695449 nonsense_mediated_decay
  ENSMUST00000148118 Trmt1-015 84694922-84697435 retained_intron
  ENSMUST00000150085 Trmt1-012 84689284-84690811 retained_intron
  ENSMUST00000152301 Trmt1-004 84689272-84695301 protein_coding
  ENSMUST00000175704 Trmt1-028 84697321-84697954 retained_intron
  ENSMUST00000175767 Trmt1-030 84699071-84699786 retained_intron
  ENSMUST00000175784 Trmt1-026 84689477-84695239 protein_coding
  ENSMUST00000175870 Trmt1-024 84689286-84690808 processed_transcript
  ENSMUST00000175884 Trmt1-029 84696974-84698261 nonsense_mediated_decay
  ENSMUST00000175980 Trmt1-020 84686307-84690936 retained_intron
  ENSMUST00000176053 Trmt1-022 84689257-84690739 processed_transcript
  ENSMUST00000176914 Trmt1-021 84686319-84687127 processed_transcript
  ENSMUST00000177084 Trmt1-007 84689257-84695530 protein_coding
  ENSMUST00000177260 Trmt1-031 84699181-84699651 retained_intron
  ENSMUST00000177286 Trmt1-027 84689632-84695530 processed_transcript
  ENSMUST00000177364 Trmt1-023 84689285-84689974 retained_intron
  ENSMUST00000177423 Trmt1-025 84689286-84695473 protein_coding
  ENSMUST00000177531 Trmt1-019 84686339-84691322 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109767ENSMUST00000109768ENSMUST00000128537ENSMUST00000137953ENSMUST00000175767ENSMUST00000175870ENSMUST00000177084ENSMUST00000177286
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109767 19.194±5.16 18.380±3.25 9.923±1.57 13.214±2.61 21.365±3.60 17.541±2.92 8.652±2.35 17.000±2.50 9.752±1.25 16.123±2.05 9.471±1.51 28.235±8.89 5.894±1.24 27.711±0.62
ENSMUST00000109768 5.947±0.00 14.114±2.93 6.315±0.18 6.461±1.88 5.674±1.19 10.395±4.39 2.008±0.34 5.621±1.06 8.054±3.34 3.977±0.00 5.029±0.95 12.207±4.03 16.659±5.71 23.364±7.59
ENSMUST00000128537 N/A N/A N/A 17.420±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137953 6.141±2.55 7.618±0.77 4.930±0.84 4.668±1.03 5.026±2.20 4.172±0.40 1.546±0.08 2.561±0.56 3.014±0.72 3.782±0.00 1.572±0.22 8.458±1.29 4.048±1.01 N/A
ENSMUST00000175767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 83.981±0.00 N/A
ENSMUST00000175870 N/A N/A N/A N/A N/A 44.039±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.993±0.00
ENSMUST00000177286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.529±0.00 11.460±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230
CIL_0007HR CIL_0007HR_0002 CGP 8:84670483-84699808

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0003723 IEA RNA binding
GO:0004809 IEA tRNA (guanine-N2-)-methyltransferase activity
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0030488 IEA tRNA methylation
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010978 trmt1 tRNA methyltransferase 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000104907 TRMT1 tRNA methyltransferase 1 homolog (S. cerevisiae) protein_coding Homo_sapiens

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