C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA methyltransferase 1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104907 TRMT1 9606 - 19:13104902-13117567 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000221504 TRMT1-002 13104907-13116657 protein_coding
  ENST00000357720 TRMT1-201 13104902-13116749 protein_coding
  ENST00000437766 TRMT1-202 13104902-13116649 protein_coding
  ENST00000585435 TRMT1-016 13107602-13109642 retained_intron
  ENST00000585622 TRMT1-018 13115702-13116721 retained_intron
  ENST00000586224 TRMT1-008 13115464-13116748 nonsense_mediated_decay
  ENST00000586830 TRMT1-017 13107775-13109732 retained_intron
  ENST00000587487 TRMT1-012 13109645-13116702 protein_coding
  ENST00000587633 TRMT1-015 13110186-13116027 nonsense_mediated_decay
  ENST00000588229 TRMT1-020 13115871-13116736 protein_coding
  ENST00000588511 TRMT1-004 13104939-13116725 retained_intron
  ENST00000588746 TRMT1-011 13115458-13116736 nonsense_mediated_decay
  ENST00000588813 TRMT1-021 13115379-13116733 processed_transcript
  ENST00000590812 TRMT1-005 13115836-13116759 retained_intron
  ENST00000591425 TRMT1-010 13115423-13116736 processed_transcript
  ENST00000591717 TRMT1-007 13113001-13116749 nonsense_mediated_decay
  ENST00000592062 TRMT1-001 13104907-13117567 protein_coding
  ENST00000592606 TRMT1-006 13115947-13116759 retained_intron
  ENST00000592729 TRMT1-013 13115441-13116622 processed_transcript
  ENST00000592814 TRMT1-019 13110158-13116712 protein_coding
  ENST00000592892 TRMT1-009 13115627-13116748 processed_transcript
  ENST00000593157 TRMT1-003 13104907-13116740 retained_intron
  ENST00000593257 TRMT1-014 13112955-13116159 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221504ENST00000357720ENST00000586224ENST00000586830ENST00000587487ENST00000587633ENST00000588229ENST00000588511ENST00000591717ENST00000592814ENST00000592892ENST00000593157ENST00000593257
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221504 N/A 2.833±0.00 N/A N/A N/A N/A N/A N/A N/A 2.689±0.00 N/A N/A N/A 4.382±0.00
ENST00000357720 5.945±0.00 3.091±0.00 0.615±0.00 3.620±1.93 3.578±1.89 3.397±0.00 3.473±0.00 5.719±0.00 2.879±2.60 1.475±0.66 9.528±8.87 9.526±5.86 11.424±3.80 9.830±3.84
ENST00000586224 N/A N/A N/A N/A N/A N/A N/A N/A 1.467±0.00 N/A 4.324±0.00 2.245±0.00 N/A N/A
ENST00000586830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 52.095±0.00 N/A 62.826±0.00
ENST00000587487 N/A N/A N/A 1.380±0.00 N/A 3.131±0.00 0.641±0.00 N/A 0.977±0.00 N/A N/A N/A N/A N/A
ENST00000587633 N/A N/A 1.482±0.00 N/A 2.882±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.125±0.00 N/A N/A
ENST00000588511 N/A N/A N/A N/A N/A N/A N/A N/A 0.708±0.50 N/A N/A N/A N/A N/A
ENST00000591717 N/A N/A N/A 5.073±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592814 N/A N/A N/A N/A N/A 2.310±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592892 N/A N/A N/A 4.810±0.00 N/A 10.090±0.00 N/A 3.943±0.00 N/A 8.492±0.00 N/A N/A N/A N/A
ENST00000593157 2.869±0.00 11.897±0.00 N/A 2.317±0.00 4.772±0.00 2.596±0.00 0.545±0.49 6.161±0.00 0.309±0.00 4.623±0.00 N/A 6.682±2.30 0.988±0.00 6.018±0.00
ENST00000593257 N/A N/A N/A N/A 6.254±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0003723 IEA RNA binding
GO:0004809 IEA tRNA (guanine-N2-)-methyltransferase activity
GO:0008033 IEA tRNA processing
GO:0030488 IEA tRNA methylation
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010978 trmt1 tRNA methyltransferase 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000001909 Trmt1 tRNA methyltransferase 1 protein_coding Mus_musculus

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