C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA methyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137953 Trmt1-009 ENSMUSG00000001909 10090 + 8:84689283-84699808 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000137953
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000137953 6.141±2.55 7.618±0.77 4.930±0.84 4.668±1.03 5.026±2.20 4.172±0.40 1.546±0.08 2.561±0.56 3.014±0.72 3.782±0.00 1.572±0.22 8.458±1.29 4.048±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230
CIL_0007HR CIL_0007HR_0002 CGP 8:84670483-84699808

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221504 TRMT1-002 protein_coding Homo_sapiens 0 710
ENST00000357720 TRMT1-201 protein_coding Homo_sapiens 0 937
ENST00000437766 TRMT1-202 protein_coding Homo_sapiens 0 937
ENST00000443260 RP13-150K15.1-001 processed_pseudogene Homo_sapiens 0 765
ENST00000585435 TRMT1-016 retained_intron Homo_sapiens 0 230
ENST00000585622 TRMT1-018 retained_intron Homo_sapiens 0.000000000003 77
ENST00000586830 TRMT1-017 retained_intron Homo_sapiens 0 267
ENST00000587487 TRMT1-012 protein_coding Homo_sapiens 0 375
ENST00000588511 TRMT1-004 retained_intron Homo_sapiens 0 833
ENST00000592062 TRMT1-001 protein_coding Homo_sapiens 0 937
ENST00000593157 TRMT1-003 retained_intron Homo_sapiens 0 833

Loading