C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | tRNA methyltransferase 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000001974  |
Trmt1-001 |
ENSMUSG00000001909 |
10090 | + |
8:84688866-84699808  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007ZV | CIL_0007ZV_0002 | VISTA | 8:84428902-85032705 |
| CIL_0007VV | CIL_0007VV_0002 | VISTA | 8:84441926-85045230 |
| CIL_0007HR | CIL_0007HR_0002 | CGP | 8:84670483-84699808 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000049 | IEA | tRNA binding |
| GO:0004809 | IEA | tRNA (guanine-N2-)-methyltransferase activity |
| GO:0005575 | ND | cellular_component |
| GO:0008150 | ND | biological_process |
| GO:0030488 | IEA | tRNA methylation |
| GO:0044822 | IEA | poly(A) RNA binding |
| GO:0046872 | IEA | metal ion binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000221504
|
TRMT1-002 | protein_coding | Homo_sapiens | 0 | 878 |
|
ENST00000357720
|
TRMT1-201 | protein_coding | Homo_sapiens | 0 | 1688 |
|
ENST00000437766
|
TRMT1-202 | protein_coding | Homo_sapiens | 0 | 1653 |
|
ENST00000443260
|
RP13-150K15.1-001 | processed_pseudogene | Homo_sapiens | 0 | 1258 |
|
ENST00000585435
|
TRMT1-016 | retained_intron | Homo_sapiens | 0 | 230 |
|
ENST00000586224
|
TRMT1-008 | nonsense_mediated_decay | Homo_sapiens | 1e-39 | 167 |
|
ENST00000586830
|
TRMT1-017 | retained_intron | Homo_sapiens | 0 | 267 |
|
ENST00000587487
|
TRMT1-012 | protein_coding | Homo_sapiens | 0 | 782 |
|
ENST00000587633
|
TRMT1-015 | nonsense_mediated_decay | Homo_sapiens | 3e-26 | 122 |
|
ENST00000588511
|
TRMT1-004 | retained_intron | Homo_sapiens | 0 | 1334 |
|
ENST00000588813
|
TRMT1-021 | processed_transcript | Homo_sapiens | 0 | 241 |
|
ENST00000592062
|
TRMT1-001 | protein_coding | Homo_sapiens | 0 | 1700 |
|
ENST00000592814
|
TRMT1-019 | protein_coding | Homo_sapiens | 0 | 566 |
|
ENST00000592892
|
TRMT1-009 | processed_transcript | Homo_sapiens | 0 | 195 |
|
ENST00000593157
|
TRMT1-003 | retained_intron | Homo_sapiens | 0 | 1530 |
