C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA methyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109767 Trmt1-002 ENSMUSG00000001909 10090 + 8:84689247-84699787 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109767
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109767 19.194±5.16 18.380±3.25 9.923±1.57 13.214±2.61 21.365±3.60 17.541±2.92 8.652±2.35 17.000±2.50 9.752±1.25 16.123±2.05 9.471±1.51 28.235±8.89 5.894±1.24 27.711±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230
CIL_0007HR CIL_0007HR_0002 CGP 8:84670483-84699808

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0004809 IEA tRNA (guanine-N2-)-methyltransferase activity
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0030488 IEA tRNA methylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221504 TRMT1-002 protein_coding Homo_sapiens 0 876
ENST00000357720 TRMT1-201 protein_coding Homo_sapiens 0 1652
ENST00000437766 TRMT1-202 protein_coding Homo_sapiens 0 1652
ENST00000443260 RP13-150K15.1-001 processed_pseudogene Homo_sapiens 0 1258
ENST00000585435 TRMT1-016 retained_intron Homo_sapiens 0 230
ENST00000586224 TRMT1-008 nonsense_mediated_decay Homo_sapiens 1e-39 167
ENST00000586830 TRMT1-017 retained_intron Homo_sapiens 0 267
ENST00000587487 TRMT1-012 protein_coding Homo_sapiens 0 782
ENST00000587633 TRMT1-015 nonsense_mediated_decay Homo_sapiens 3e-26 122
ENST00000588511 TRMT1-004 retained_intron Homo_sapiens 0 1334
ENST00000588813 TRMT1-021 processed_transcript Homo_sapiens 0 241
ENST00000592062 TRMT1-001 protein_coding Homo_sapiens 0 1652
ENST00000592814 TRMT1-019 protein_coding Homo_sapiens 0 564
ENST00000592892 TRMT1-009 processed_transcript Homo_sapiens 2e-37 159
ENST00000593157 TRMT1-003 retained_intron Homo_sapiens 0 1530

Loading