C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA methyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109768 Trmt1-003 ENSMUSG00000001909 10090 + 8:84689264-84699786 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109768
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109768 5.947±0.00 14.114±2.93 6.315±0.18 6.461±1.88 5.674±1.19 10.395±4.39 2.008±0.34 5.621±1.06 8.054±3.34 3.977±0.00 5.029±0.95 12.207±4.03 16.659±5.71 23.364±7.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230
CIL_0007HR CIL_0007HR_0002 CGP 8:84670483-84699808

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0004809 IEA tRNA (guanine-N2-)-methyltransferase activity
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0030488 IEA tRNA methylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221504 TRMT1-002 protein_coding Homo_sapiens 0 857
ENST00000357720 TRMT1-201 protein_coding Homo_sapiens 0 1633
ENST00000437766 TRMT1-202 protein_coding Homo_sapiens 0 1633
ENST00000443260 RP13-150K15.1-001 processed_pseudogene Homo_sapiens 0 1258
ENST00000585435 TRMT1-016 retained_intron Homo_sapiens 0 230
ENST00000586224 TRMT1-008 nonsense_mediated_decay Homo_sapiens 1e-39 167
ENST00000586830 TRMT1-017 retained_intron Homo_sapiens 0 267
ENST00000587487 TRMT1-012 protein_coding Homo_sapiens 0 782
ENST00000587633 TRMT1-015 nonsense_mediated_decay Homo_sapiens 3e-26 122
ENST00000588511 TRMT1-004 retained_intron Homo_sapiens 0 1334
ENST00000588813 TRMT1-021 processed_transcript Homo_sapiens 0 241
ENST00000592062 TRMT1-001 protein_coding Homo_sapiens 0 1633
ENST00000592814 TRMT1-019 protein_coding Homo_sapiens 0 545
ENST00000592892 TRMT1-009 processed_transcript Homo_sapiens 2e-37 159
ENST00000593157 TRMT1-003 retained_intron Homo_sapiens 0 1530

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