C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptonemal complex central element protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003824 Syce2 10090 + 8:84872111-84888221 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000003922 Syce2-002 84872193-84887456 nonsense_mediated_decay
  ENSMUST00000136026 Syce2-001 84872111-84888221 protein_coding
  ENSMUST00000144466 Syce2-003 84872438-84886002 retained_intron
  ENSMUST00000170296 Syce2-201 84872111-84887446 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003922ENSMUST00000136026ENSMUST00000144466ENSMUST00000170296
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003922 0.482±0.39 0.350±0.16 1.002±0.21 3.423±2.19 0.719±0.25 0.585±0.12 0.251±0.05 1.382±0.73 6.694±4.71 0.567±0.20 0.287±0.15 1.800±1.46 16.993±4.11 44.685±31.15
ENSMUST00000136026 0.490±0.31 0.075±0.01 0.470±0.04 1.286±0.92 0.273±0.17 0.416±0.24 0.078±0.03 0.409±0.18 1.817±1.46 0.386±0.16 0.131±0.05 0.589±0.30 2.865±0.45 16.565±3.08
ENSMUST00000144466 0.212±0.00 0.277±0.19 N/A N/A 0.182±0.00 0.255±0.07 N/A N/A N/A 0.240±0.00 N/A 3.351±0.72 N/A N/A
ENSMUST00000170296 N/A 0.290±0.08 N/A 0.624±0.00 N/A 0.144±0.00 0.107±0.04 0.368±0.00 4.029±2.45 0.247±0.05 0.182±0.04 2.913±0.37 9.923±5.94 40.731±35.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230
CIL_0006LV CIL_0006LV_0002 CGP 8:84856989-84888221
CIL_00076Z CIL_00076Z_0002 CGP 8:84872111-84893921

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000795 ISS synaptonemal complex
GO:0000801 IDA central element
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0007130 IC synaptonemal complex assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058375 syce2 synaptonemal complex central element protein 2 protein_coding Danio_rerio
ENSG00000161860 SYCE2 synaptonemal complex central element protein 2 protein_coding Homo_sapiens

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