C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein A2/B1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004980 Hnrnpa2b1 10090 - 6:51460434-51469894 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000069949 Hnrnpa2b1-201 51460932-51469894 protein_coding
  ENSMUST00000090002 Hnrnpa2b1-202 51461124-51469845 protein_coding
  ENSMUST00000114459 Hnrnpa2b1-203 51460434-51469894 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069949ENSMUST00000090002ENSMUST00000114459
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069949 12.993±1.48 83.870±12.39 N/A N/A 24.290±7.82 27.778±5.32 N/A 14.527±2.60 8.474±0.85 19.910±3.61 N/A 25.095±10.83 58.339±2.23 47.191±31.77
ENSMUST00000090002 17.570±6.80 20.272±0.47 86.911±4.04 177.058±19.15 11.286±1.86 9.628±0.00 33.044±0.93 23.179±8.59 141.134±115.66 14.788±4.32 60.258±21.03 140.828±177.00 205.440±105.57 59.780±66.84
ENSMUST00000114459 28.431±10.23 16.990±2.62 61.337±20.70 72.910±61.83 25.531±3.26 17.765±2.43 18.148±1.67 21.716±3.36 81.213±72.66 30.273±3.55 18.182±11.18 36.120±26.03 44.901±23.25 16.187±5.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y0 CIL_0007Y0_0002 VISTA 6:50872427-51473473
CIL_0007VE CIL_0007VE_0002 VISTA 6:50894712-51498223
CIL_0008Q3 CIL_0008Q3_0002 VISTA 6:51033774-51634476
CIL_000874 CIL_000874_0002 VISTA 6:51061843-51662696
CIL_0009DE CIL_0009DE_0002 VISTA 6:51408576-52009543
CIL_0002CP CIL_0002CP_0002 CGP 6:51432670-51469894
CIL_0002CO CIL_0002CO_0002 CGP 6:51460434-51483704

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0003723 ISS RNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005681 ISS spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 ISS mRNA processing
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0030529 ISS ribonucleoprotein complex
GO:0043047 ISS single-stranded telomeric DNA binding
GO:0044822 IEA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0050658 ISS RNA transport
GO:0071013 IEA catalytic step 2 spliceosome
GO:0097157 IDA pre-mRNA intronic binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000122566 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 protein_coding Homo_sapiens

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