C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A2/B1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114459 Hnrnpa2b1-203 ENSMUSG00000004980 10090 - 6:51460434-51469894 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114459
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114459 28.431±10.23 16.990±2.62 61.337±20.70 72.910±61.83 25.531±3.26 17.765±2.43 18.148±1.67 21.716±3.36 81.213±72.66 30.273±3.55 18.182±11.18 36.120±26.03 44.901±23.25 16.187±5.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y0 CIL_0007Y0_0002 VISTA 6:50872427-51473473
CIL_0007VE CIL_0007VE_0002 VISTA 6:50894712-51498223
CIL_0008Q3 CIL_0008Q3_0002 VISTA 6:51033774-51634476
CIL_000874 CIL_000874_0002 VISTA 6:51061843-51662696
CIL_0009DE CIL_0009DE_0002 VISTA 6:51408576-52009543
CIL_0002CP CIL_0002CP_0002 CGP 6:51432670-51469894
CIL_0002CO CIL_0002CO_0002 CGP 6:51460434-51483704

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0003723 ISS RNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005681 ISS spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 ISS mRNA processing
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0030529 ISS ribonucleoprotein complex
GO:0043047 ISS single-stranded telomeric DNA binding
GO:0044822 IEA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0050658 ISS RNA transport
GO:0071013 IEA catalytic step 2 spliceosome
GO:0097157 IDA pre-mRNA intronic binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354667 HNRNPA2B1-001 protein_coding Homo_sapiens 0 3827
ENST00000356674 HNRNPA2B1-002 protein_coding Homo_sapiens 0 2612
ENST00000360787 HNRNPA2B1-006 nonsense_mediated_decay Homo_sapiens 0 1561
ENST00000411735 HNRNPA1P46-001 processed_pseudogene Homo_sapiens 2e-30 137
ENST00000463181 HNRNPA2B1-003 retained_intron Homo_sapiens 0 2268
ENST00000476233 HNRNPA2B1-007 processed_transcript Homo_sapiens 0 1027
ENST00000490912 HNRNPA2B1-004 retained_intron Homo_sapiens 0 2433
ENST00000495810 HNRNPA2B1-008 retained_intron Homo_sapiens 0 512
ENST00000618183 HNRNPA2B1-201 protein_coding Homo_sapiens 0 2796

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