C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TNF receptor-associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006137 Trap1-001 ENSMUSG00000005981 10090 - 16:4039971-4077827 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006137
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006137 77.030±8.90 98.603±36.44 41.796±0.63 33.297±7.91 61.237±7.47 40.994±4.93 61.385±2.93 168.512±48.08 83.706±15.41 30.922±3.32 63.751±1.40 72.500±8.57 41.182±15.13 35.146±4.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AY CIL_0000AY_0002 CGP 16:3979105-4040024
CIL_0000ON CIL_0000ON_0002 CGP 16:4036942-4077827
CIL_00029G CIL_00029G_0003 CGP 16:4039971-4213407

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005743 ISS mitochondrial inner membrane
GO:0005758 ISS mitochondrial intermembrane space
GO:0005759 ISS mitochondrial matrix
GO:0005811 ISS lipid particle
GO:0006457 IEA protein folding
GO:0006950 IEA response to stress
GO:0016020 IEA membrane
GO:0019901 ISS protein kinase binding
GO:0044822 ISS poly(A) RNA binding
GO:0051082 IEA unfolded protein binding
GO:0070062 IEA extracellular vesicular exosome
GO:1901856 ISS negative regulation of cellular respiration
GO:1902176 ISS negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000124450 trap1-202 protein_coding Danio_rerio 0 907
ENSDART00000145548 trap1-001 protein_coding Danio_rerio 0 893
ENST00000246957 TRAP1-001 protein_coding Homo_sapiens 0 2085
ENST00000407479 DNASE1-005 protein_coding Homo_sapiens 7.00649e-43 182
ENST00000538171 TRAP1-003 protein_coding Homo_sapiens 0 2006
ENST00000571804 TRAP1-008 nonsense_mediated_decay Homo_sapiens 0 568
ENST00000573872 TRAP1-012 processed_transcript Homo_sapiens 0 523
ENST00000574175 TRAP1-013 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000574494 TRAP1-017 retained_intron Homo_sapiens 0 309
ENST00000575671 TRAP1-004 protein_coding Homo_sapiens 0 1666
ENST00000575854 TRAP1-011 processed_transcript Homo_sapiens 0 388
ENST00000576335 TRAP1-018 protein_coding Homo_sapiens 0 719

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