C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107700 Snf8-005 ENSMUSG00000006058 10090 + 11:96034965-96047430 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000107700
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000107700 3.160±0.12 1.979±0.45 6.142±0.00 2.506±0.66 4.457±0.00 2.716±0.45 4.282±1.25 3.210±0.60 2.924±0.44 4.940±3.20 10.530±0.73 5.681±0.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290330 SNF8-002 protein_coding Homo_sapiens 0 828
ENST00000502492 SNF8-001 protein_coding Homo_sapiens 0 828
ENST00000504000 SNF8-003 retained_intron Homo_sapiens 0 211
ENST00000507302 SNF8-007 nonsense_mediated_decay Homo_sapiens 0 470
ENST00000509989 SNF8-011 nonsense_mediated_decay Homo_sapiens 0 202
ENST00000509995 SNF8-008 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000510195 SNF8-005 retained_intron Homo_sapiens 0 556
ENST00000510558 SNF8-006 nonsense_mediated_decay Homo_sapiens 0 643
ENST00000512243 SNF8-009 retained_intron Homo_sapiens 0 549
ENST00000514089 SNF8-015 processed_transcript Homo_sapiens 0 211
ENST00000514929 SNF8-004 nonsense_mediated_decay Homo_sapiens 0 643
ENST00000515572 SNF8-012 retained_intron Homo_sapiens 0 211
ENST00000573795 SNF8-017 nonsense_mediated_decay Homo_sapiens 0 215
ENST00000576353 SNF8-016 nonsense_mediated_decay Homo_sapiens 0 213

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