C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145749 Snf8-002 ENSMUSG00000006058 10090 + 11:96044690-96047430 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000145749
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000145749 2.265±0.00 1.778±0.22 4.053±0.00 3.467±0.00 2.187±0.81 3.036±0.49 0.743±0.00 1.471±0.01 1.849±0.00 2.143±0.00 1.202±0.00 2.678±0.84 3.253±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290330 SNF8-002 protein_coding Homo_sapiens 0 211
ENST00000502492 SNF8-001 protein_coding Homo_sapiens 0 211
ENST00000504000 SNF8-003 retained_intron Homo_sapiens 0 211
ENST00000509989 SNF8-011 nonsense_mediated_decay Homo_sapiens 0 202
ENST00000509995 SNF8-008 nonsense_mediated_decay Homo_sapiens 0 211
ENST00000510558 SNF8-006 nonsense_mediated_decay Homo_sapiens 0 211
ENST00000514089 SNF8-015 processed_transcript Homo_sapiens 0 211
ENST00000515572 SNF8-012 retained_intron Homo_sapiens 0 211
ENST00000573795 SNF8-017 nonsense_mediated_decay Homo_sapiens 0 202
ENST00000576353 SNF8-016 nonsense_mediated_decay Homo_sapiens 3e-31 139

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