C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TCF3 (E2A) fusion partner
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000006335 Tfpt 10090 - 7:3620324-3629929 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000058880 Tfpt-005 3620335-3629086 nonsense_mediated_decay
  ENSMUST00000108641 Tfpt-001 3620324-3629929 protein_coding
  ENSMUST00000153143 Tfpt-003 3624594-3629579 nonsense_mediated_decay
  ENSMUST00000155592 Tfpt-002 3620324-3629884 protein_coding
  ENSMUST00000156194 Tfpt-004 3620779-3629579 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058880ENSMUST00000108641ENSMUST00000153143ENSMUST00000155592ENSMUST00000156194
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058880 1.357±0.00 0.529±0.00 N/A N/A 0.982±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000108641 2.481±0.54 1.403±0.57 4.596±0.66 6.658±2.29 2.020±0.71 2.078±0.97 2.424±0.76 2.452±0.58 3.658±2.46 2.190±0.37 2.577±0.77 2.640±2.11 7.374±3.18 4.998±1.85
ENSMUST00000153143 N/A N/A N/A 22.871±0.00 N/A N/A N/A N/A N/A N/A N/A 29.969±0.00 19.780±0.88 18.040±0.00
ENSMUST00000155592 2.977±1.23 1.383±0.85 6.066±0.92 5.310±1.35 1.301±0.60 1.289±0.47 2.065±0.88 2.243±0.63 2.156±1.01 1.619±0.50 4.114±1.15 4.249±3.69 3.755±1.22 5.811±0.78
ENSMUST00000156194 N/A N/A N/A N/A N/A 0.921±0.00 N/A N/A N/A N/A N/A 2.412±0.58 4.587±0.34 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NN CIL_0005NN_0002 CGP 7:3617373-3629929
CIL_0005O3 CIL_0005O3_0002 CGP 7:3620324-3642486

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005730 IEA nucleolus
GO:0005737 ISS cytoplasm
GO:0005884 ISS actin filament
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006915 ISS apoptotic process
GO:0019901 ISS protein kinase binding
GO:0031011 IEA Ino80 complex
GO:0043065 IEA positive regulation of apoptotic process
GO:0046982 IEA protein heterodimerization activity
GO:0097190 ISS apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089572 TFPT TCF3 fusion partner homolog (tfpt), mRNA protein_coding Danio_rerio
ENSG00000105619 TFPT TCF3 (E2A) fusion partner (in childhood Leukemia) protein_coding Homo_sapiens

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