C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000EP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000078328-ENSG00000232258 CGP 9606 16:6019094-8590193
GeneTranscriptPositionBiotype
ENSG00000078328 (RBFOX1)
RNA binding protein, fox-1 homolog (C. elegans) 1 		ENST00000311745 (RBFOX1-001) 7332750-7712504 protein_coding
ENST00000340209 (RBFOX1-201) 7332750-7713338 protein_coding
ENST00000355637 (RBFOX1-002) 7332750-7712504 protein_coding
ENST00000422070 (RBFOX1-009) 6019703-7709781 protein_coding
ENST00000436368 (RBFOX1-011) 7332750-7710844 protein_coding
ENST00000535565 (RBFOX1-005) 6483179-7709776 protein_coding
ENST00000547338 (RBFOX1-008) 6773809-7710844 protein_coding
ENST00000547372 (RBFOX1-010) 6019593-7711458 protein_coding
ENST00000547427 (RBFOX1-012) 6483324-7328793 processed_transcript
ENST00000547605 (RBFOX1-014) 6019094-7653846 protein_coding
ENST00000548749 (RBFOX1-013) 6019703-6723887 processed_transcript
ENST00000550418 (RBFOX1-003) 6019131-7713338 protein_coding
ENST00000551752 (RBFOX1-007) 6483793-7653846 protein_coding
ENST00000552089 (RBFOX1-006) 6483386-7710763 protein_coding
ENST00000553186 (RBFOX1-004) 6019131-7710840 protein_coding
ENST00000564850 (RBFOX1-015) 7597217-7630626 retained_intron
ENST00000567470 (RBFOX1-018) 7653866-7710819 protein_coding
ENST00000569889 (RBFOX1-017) 7422778-7579785 processed_transcript
ENST00000570188 (RBFOX1-016) 7664764-7710844 retained_intron
ENST00000570626 (RBFOX1-019) 7510122-7595641 protein_coding
ENST00000620507 (RBFOX1-202) 7332750-7713338 protein_coding
ENSG00000200869 (RNU6-457P)
RNA, U6 small nuclear 457, pseudogene 		ENST00000363999 (RNU6-457P-201) 6873899-6874005 snRNA
ENSG00000232258 (TMEM114)
transmembrane protein 114 		ENST00000444171 (TMEM114-002) 8569706-8572302 retained_intron
ENST00000568335 (TMEM114-004) 8569500-8590193 protein_coding
ENST00000620492 (TMEM114-001) 8569500-8589838 protein_coding
ENST00000623677 (TMEM114-005) 8537605-8589749 processed_transcript
ENST00000624696 (TMEM114-003) 8569747-8589838 protein_coding
ENSG00000240419 (RP11-545E8.1)
 ENST00000495947 (RP11-545E8.1-001) 7126293-7126639 processed_pseudogene
ENSG00000257180 (RP11-509E10.1)
 ENST00000549303 (RP11-509E10.1-001) 6056975-6092954 sense_intronic
ENSG00000259963 (RP11-185J20.2)
 ENST00000567192 (RP11-185J20.2-001) 6721786-6721960 processed_pseudogene
ENSG00000260003 (RP11-279O17.2)
 ENST00000562361 (RP11-279O17.2-001) 8276263-8295700 lincRNA
ENSG00000260058 (RP11-279O17.3)
 ENST00000564185 (RP11-279O17.3-001) 8309962-8357860 lincRNA
ENSG00000260289 (CTD-2535I10.1)
 ENST00000567103 (CTD-2535I10.1-001) 7888489-7894395 lincRNA
ENSG00000260379 (RP11-483K5.2)
 ENST00000567734 (RP11-483K5.2-001) 8508069-8508585 processed_pseudogene
ENSG00000260835 (RP11-468I15.1)
 ENST00000564076 (RP11-468I15.1-001) 6573767-6577359 sense_intronic
ENSG00000261198 (RP11-26O3.1)
 ENST00000565247 (RP11-26O3.1-001) 7614230-7614992 antisense
ENSG00000261319 (RP11-279O17.1)
 ENST00000566208 (RP11-279O17.1-001) 8298492-8299772 lincRNA
ENSG00000278975 (RP11-185J20.1)
 ENST00000623206 (RP11-185J20.1-001) 6703883-6705558 TEC
ENSG00000279877 (RP11-420N3.3)
 ENST00000569895 (RP11-420N3.3-001) 5239802-6776014 processed_transcript
ENSG00000280000 (RP11-509E10.3)
 ENST00000624136 (RP11-509E10.3-001) 6037210-6038977 TEC

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0000EP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000008658-ENSMUSG00000022715 CGP 10090 16:6809222-8425136
GeneTranscriptPositionBiotype
ENSMUSG00000008658 (Rbfox1)
RNA binding protein, fox-1 homolog (C. elegans) 1 		ENSMUST00000056416 (Rbfox1-201) 7069835-7412479 protein_coding
ENSMUST00000115841 (Rbfox1-202) 6809222-7409813 protein_coding
ENSMUSG00000022715 (Cldn26)
claudin 26 		ENSMUST00000023400 (Cldn26-201) 8409276-8425136 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000EP_0001ENSG00000078328ENST00000311745ENST00000340209ENST00000355637ENST00000422070ENST00000436368ENST00000535565ENST00000547338ENST00000547372ENST00000547427ENST00000547605ENST00000548749ENST00000550418ENST00000551752ENST00000552089ENST00000553186ENST00000564850ENST00000567470ENST00000569889ENST00000570188ENST00000570626ENST00000620507ENSG00000200869ENST00000363999ENSG00000232258ENST00000444171ENST00000568335ENST00000620492ENST00000623677ENST00000624696ENSG00000240419ENST00000495947ENSG00000257180ENST00000549303ENSG00000259963ENST00000567192ENSG00000260003ENST00000562361ENSG00000260058ENST00000564185ENSG00000260289ENST00000567103ENSG00000260379ENST00000567734ENSG00000260835ENST00000564076ENSG00000261198ENST00000565247ENSG00000261319ENST00000566208ENSG00000278975ENST00000623206ENSG00000279877ENST00000569895ENSG00000280000ENST00000624136CIL_0000EP_0002ENSMUSG00000008658ENSMUST00000056416ENSMUST00000115841ENSMUSG00000022715ENSMUST00000023400
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000EP_0001ENSG00000078328ENST00000311745ENST00000340209ENST00000355637ENST00000436368ENST00000547372ENST00000547427ENST00000550418ENST00000552089ENST00000567470ENST00000569889ENST00000620507ENSG00000200869ENST00000363999ENSG00000232258ENST00000444171ENST00000568335ENST00000620492ENST00000624696ENSG00000240419ENST00000495947ENSG00000257180ENST00000549303ENSG00000259963ENST00000567192ENSG00000260003ENST00000562361ENSG00000260058ENST00000564185ENSG00000260289ENST00000567103ENSG00000260379ENST00000567734ENSG00000260835ENST00000564076ENSG00000261198ENST00000565247ENSG00000261319ENST00000566208ENSG00000278975ENST00000623206ENSG00000279877ENST00000569895ENSG00000280000ENST00000624136CIL_0000EP_0002ENSMUSG00000008658ENSMUST00000056416ENSMUST00000115841ENSMUSG00000022715ENSMUST00000023400
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000078328 ENST00000311745 0.004±0.00 N/A 0.035±0.00 6.570±0.00 N/A 0.090±0.00 3.975±0.00 0.076±0.00 0.082±0.00 N/A N/A 0.115±0.00 N/A 0.321±0.00
ENST00000340209 N/A N/A N/A N/A 0.071±0.00 N/A 1.338±0.12 N/A N/A N/A 9.257±8.05 N/A 0.091±0.00 N/A
ENST00000355637 N/A N/A N/A N/A 0.203±0.00 N/A 2.928±0.84 N/A N/A N/A 15.909±11.90 N/A N/A 0.115±0.00
ENST00000422070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436368 N/A N/A N/A N/A 0.222±0.00 N/A 4.872±0.00 N/A N/A N/A 3.842±0.00 N/A N/A N/A
ENST00000535565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547372 0.004±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A
ENST00000547427 N/A N/A 0.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550418 N/A N/A N/A 6.811±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.046±0.00 N/A
ENST00000551752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.578±0.00
ENST00000553186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.442±0.00 N/A
ENST00000569889 N/A N/A N/A N/A 1.048±0.00 0.461±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620507 N/A N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A 0.012±0.00 N/A
ENSG00000200869 ENST00000363999 N/A N/A N/A 0.794±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232258 ENST00000444171 N/A 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568335 N/A N/A N/A N/A N/A 0.210±0.00 N/A N/A N/A N/A N/A N/A N/A 0.169±0.00
ENST00000620492 N/A N/A N/A 0.095±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.123±0.00
ENST00000623677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.072±0.00
ENSG00000240419 ENST00000495947 N/A N/A N/A 0.160±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257180 ENST00000549303 0.043±0.00 0.179±0.00 N/A 0.086±0.00 0.117±0.04 0.012±0.00 0.026±0.00 0.013±0.00 N/A 0.034±0.00 N/A 0.076±0.00 N/A 0.142±0.00
ENSG00000259963 ENST00000567192 N/A N/A N/A 0.302±0.00 N/A 3.965±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260003 ENST00000562361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.190±0.04
ENSG00000260058 ENST00000564185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.079±0.00
ENSG00000260289 ENST00000567103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.02 0.092±0.07
ENSG00000260379 ENST00000567734 0.075±0.00 0.119±0.00 N/A 0.131±0.00 N/A N/A N/A 0.080±0.00 N/A 0.038±0.00 0.276±0.00 N/A N/A 0.036±0.00
ENSG00000260835 ENST00000564076 N/A N/A N/A 0.093±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.485±0.00
ENSG00000261198 ENST00000565247 N/A N/A N/A 0.067±0.00 N/A N/A 0.079±0.06 N/A N/A N/A N/A N/A N/A N/A
ENSG00000261319 ENST00000566208 N/A N/A N/A N/A N/A N/A 0.047±0.00 N/A N/A N/A N/A 0.125±0.00 N/A 2.403±2.08
ENSG00000278975 ENST00000623206 N/A N/A 0.039±0.00 0.323±0.26 0.601±0.00 N/A N/A 0.036±0.00 0.264±0.00 N/A N/A N/A N/A 0.051±0.00
ENSG00000279877 ENST00000569895 0.064±0.00 N/A 0.172±0.00 N/A N/A N/A N/A 0.133±0.00 0.403±0.00 0.160±0.00 N/A 0.145±0.11 0.066±0.02 N/A
ENSG00000280000 ENST00000624136 0.172±0.00 0.191±0.00 N/A 0.171±0.11 0.080±0.00 0.223±0.15 0.048±0.00 0.126±0.00 0.044±0.00 0.087±0.00 0.005±0.00 0.037±0.00 N/A 0.089±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008658 ENSMUST00000056416 0.016±0.00 0.102±0.01 N/A 16.709±7.12 1.061±0.76 0.043±0.01 4.385±1.21 0.238±0.06 0.022±0.01 0.608±0.21 43.636±2.26 0.080±0.03 0.010±0.00 0.037±0.02
ENSMUST00000115841 0.066±0.03 1.086±0.28 0.073±0.00 28.821±19.05 2.353±3.77 0.766±0.20 4.539±0.00 1.924±0.19 0.050±0.01 0.880±0.22 N/A 1.044±0.28 0.047±0.00 0.150±0.08
ENSMUSG00000022715 ENSMUST00000023400 0.061±0.02 0.049±0.01 0.027±0.01 0.217±0.21 N/A 0.050±0.02 0.032±0.00 N/A 0.011±0.01 N/A 0.059±0.00 1.220±0.46 0.057±0.05 9.931±2.76

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