C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000EQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000118894-ENSG00000078328 CGP 9606 16:5084304-7713338
GeneTranscriptPositionBiotype
ENSG00000033011 (ALG1)
ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 		ENST00000262374 (ALG1-001) 5071819-5085587 protein_coding
ENST00000544428 (ALG1-003) 5072248-5085057 protein_coding
ENST00000586840 (ALG1-011) 5071822-5077469 protein_coding
ENST00000588623 (ALG1-004) 5033960-5085390 protein_coding
ENST00000591783 (ALG1-010) 5072205-5078852 protein_coding
ENST00000591822 (ALG1-002) 5071849-5085018 nonsense_mediated_decay
ENST00000591961 (ALG1-005) 5033702-5043999 retained_intron
ENST00000592661 (ALG1-008) 5085071-5087379 processed_transcript
ENST00000592793 (ALG1-009) 5071843-5073428 retained_intron
ENSG00000078328 (RBFOX1)
RNA binding protein, fox-1 homolog (C. elegans) 1 		ENST00000311745 (RBFOX1-001) 7332750-7712504 protein_coding
ENST00000340209 (RBFOX1-201) 7332750-7713338 protein_coding
ENST00000355637 (RBFOX1-002) 7332750-7712504 protein_coding
ENST00000422070 (RBFOX1-009) 6019703-7709781 protein_coding
ENST00000436368 (RBFOX1-011) 7332750-7710844 protein_coding
ENST00000535565 (RBFOX1-005) 6483179-7709776 protein_coding
ENST00000547338 (RBFOX1-008) 6773809-7710844 protein_coding
ENST00000547372 (RBFOX1-010) 6019593-7711458 protein_coding
ENST00000547427 (RBFOX1-012) 6483324-7328793 processed_transcript
ENST00000547605 (RBFOX1-014) 6019094-7653846 protein_coding
ENST00000548749 (RBFOX1-013) 6019703-6723887 processed_transcript
ENST00000550418 (RBFOX1-003) 6019131-7713338 protein_coding
ENST00000551752 (RBFOX1-007) 6483793-7653846 protein_coding
ENST00000552089 (RBFOX1-006) 6483386-7710763 protein_coding
ENST00000553186 (RBFOX1-004) 6019131-7710840 protein_coding
ENST00000564850 (RBFOX1-015) 7597217-7630626 retained_intron
ENST00000567470 (RBFOX1-018) 7653866-7710819 protein_coding
ENST00000569889 (RBFOX1-017) 7422778-7579785 processed_transcript
ENST00000570188 (RBFOX1-016) 7664764-7710844 retained_intron
ENST00000570626 (RBFOX1-019) 7510122-7595641 protein_coding
ENST00000620507 (RBFOX1-202) 7332750-7713338 protein_coding
ENSG00000118894 (FAM86A)
family with sequence similarity 86, member A 		ENST00000427587 (FAM86A-001) 5084304-5097808 protein_coding
ENST00000458008 (FAM86A-002) 5084304-5097788 protein_coding
ENST00000585436 (FAM86A-008) 5084718-5097754 nonsense_mediated_decay
ENST00000585975 (FAM86A-010) 5089176-5097778 retained_intron
ENST00000586444 (FAM86A-009) 5090241-5097786 retained_intron
ENST00000587133 (FAM86A-011) 5085572-5097742 protein_coding
ENST00000587161 (FAM86A-003) 5085363-5097766 nonsense_mediated_decay
ENST00000587200 (FAM86A-013) 5085615-5097774 nonsense_mediated_decay
ENST00000587608 (FAM86A-014) 5085536-5089428 retained_intron
ENSG00000200869 (RNU6-457P)
RNA, U6 small nuclear 457, pseudogene 		ENST00000363999 (RNU6-457P-201) 6873899-6874005 snRNA
ENSG00000240419 (RP11-545E8.1)
 ENST00000495947 (RP11-545E8.1-001) 7126293-7126639 processed_pseudogene
ENSG00000242278 (RP11-382N13.1)
 ENST00000470389 (RP11-382N13.1-001) 5270174-5270954 processed_pseudogene
ENSG00000257180 (RP11-509E10.1)
 ENST00000549303 (RP11-509E10.1-001) 6056975-6092954 sense_intronic
ENSG00000259963 (RP11-185J20.2)
 ENST00000567192 (RP11-185J20.2-001) 6721786-6721960 processed_pseudogene
ENSG00000260411 (RP11-420N3.2)
 ENST00000585867 (RP11-420N3.2-002) 5239815-5600151 lincRNA
ENSG00000260431 (RP11-382N13.6)
 ENST00000565115 (RP11-382N13.6-001) 5207088-5207439 processed_pseudogene
ENSG00000260817 (RP11-382N13.4)
 ENST00000570238 (RP11-382N13.4-001) 5260686-5261043 processed_pseudogene
ENSG00000260835 (RP11-468I15.1)
 ENST00000564076 (RP11-468I15.1-001) 6573767-6577359 sense_intronic
ENSG00000261007 (RP11-382N13.3)
 ENST00000564888 (RP11-382N13.3-001) 5365797-5366688 processed_pseudogene
ENSG00000261198 (RP11-26O3.1)
 ENST00000565247 (RP11-26O3.1-001) 7614230-7614992 antisense
ENSG00000261811 (RP11-382N13.2)
 ENST00000566684 (RP11-382N13.2-001) 5215394-5220594 lincRNA
ENSG00000267070 (RP11-10K17.6)
 ENST00000589323 (RP11-10K17.6-001) 5098739-5142595 lincRNA
ENSG00000267182 (SNRPCP20)
small nuclear ribonucleoprotein polypeptide C pseudogene 20 		ENST00000588011 (SNRPCP20-001) 5289200-5289409 processed_pseudogene
ENSG00000273963 (RP11-10K17.7)
 ENST00000621765 (RP11-10K17.7-001) 5110793-5148685 unprocessed_pseudogene
ENSG00000278975 (RP11-185J20.1)
 ENST00000623206 (RP11-185J20.1-001) 6703883-6705558 TEC
ENSG00000279877 (RP11-420N3.3)
 ENST00000569895 (RP11-420N3.3-001) 5239802-6776014 processed_transcript
ENSG00000280000 (RP11-509E10.3)
 ENST00000624136 (RP11-509E10.3-001) 6037210-6038977 TEC

Homo sapiens Ensembl (GRCh38)

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0000EQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022544-ENSMUSG00000008658 CGP 10090 16:5244152-7412479
GeneTranscriptPositionBiotype
ENSMUSG00000008658 (Rbfox1)
RNA binding protein, fox-1 homolog (C. elegans) 1 		ENSMUST00000056416 (Rbfox1-201) 7069835-7412479 protein_coding
ENSMUST00000115841 (Rbfox1-202) 6809222-7409813 protein_coding
ENSMUSG00000022544 (Fam86)
family with sequence similarity 86 		ENSMUST00000064635 (Fam86-001) 5244152-5255983 protein_coding
ENSMUST00000129729 (Fam86-004) 5247387-5248870 retained_intron
ENSMUST00000132225 (Fam86-002) 5244879-5255941 retained_intron
ENSMUST00000139584 (Fam86-003) 5247375-5255956 protein_coding
ENSMUST00000140718 (Fam86-005) 5249075-5255929 retained_intron
ENSMUSG00000087168 (Gm15983)
predicted gene 15983 		ENSMUST00000140000 (Gm15983-001) 5254786-5289621 processed_transcript
ENSMUSG00000101481 (RP23-356A24.1)
RIKEN cDNA 1700123O21 gene 		ENSMUST00000190515 (RP23-356A24.1-001) 5975585-5998496 sense_intronic

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000EQ_0001ENSG00000033011ENST00000262374ENST00000544428ENST00000586840ENST00000588623ENST00000591783ENST00000591822ENST00000591961ENST00000592661ENST00000592793ENSG00000078328ENST00000311745ENST00000340209ENST00000355637ENST00000422070ENST00000436368ENST00000535565ENST00000547338ENST00000547372ENST00000547427ENST00000547605ENST00000548749ENST00000550418ENST00000551752ENST00000552089ENST00000553186ENST00000564850ENST00000567470ENST00000569889ENST00000570188ENST00000570626ENST00000620507ENSG00000118894ENST00000427587ENST00000458008ENST00000585436ENST00000585975ENST00000586444ENST00000587133ENST00000587161ENST00000587200ENST00000587608ENSG00000200869ENST00000363999ENSG00000240419ENST00000495947ENSG00000242278ENST00000470389ENSG00000257180ENST00000549303ENSG00000259963ENST00000567192ENSG00000260411ENST00000585867ENSG00000260431ENST00000565115ENSG00000260817ENST00000570238ENSG00000260835ENST00000564076ENSG00000261007ENST00000564888ENSG00000261198ENST00000565247ENSG00000261811ENST00000566684ENSG00000267070ENST00000589323ENSG00000267182ENST00000588011ENSG00000273963ENST00000621765ENSG00000278975ENST00000623206ENSG00000279877ENST00000569895ENSG00000280000ENST00000624136CIL_0000EQ_0002ENSMUSG00000008658ENSMUST00000056416ENSMUST00000115841ENSMUSG00000022544ENSMUST00000064635ENSMUST00000129729ENSMUST00000132225ENSMUST00000139584ENSMUST00000140718ENSMUSG00000087168ENSMUST00000140000ENSMUSG00000101481ENSMUST00000190515
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000EQ_0001ENSG00000033011ENST00000262374ENST00000544428ENST00000586840ENST00000588623ENST00000591783ENST00000591822ENST00000592661ENSG00000078328ENST00000311745ENST00000340209ENST00000355637ENST00000436368ENST00000547372ENST00000547427ENST00000550418ENST00000552089ENST00000567470ENST00000569889ENST00000620507ENSG00000118894ENST00000427587ENST00000458008ENST00000585436ENST00000587608ENSG00000200869ENST00000363999ENSG00000240419ENST00000495947ENSG00000242278ENST00000470389ENSG00000257180ENST00000549303ENSG00000259963ENST00000567192ENSG00000260411ENST00000585867ENSG00000260431ENST00000565115ENSG00000260817ENST00000570238ENSG00000260835ENST00000564076ENSG00000261007ENST00000564888ENSG00000261198ENST00000565247ENSG00000261811ENST00000566684ENSG00000267070ENST00000589323ENSG00000267182ENST00000588011ENSG00000273963ENST00000621765ENSG00000278975ENST00000623206ENSG00000279877ENST00000569895ENSG00000280000ENST00000624136CIL_0000EQ_0002ENSMUSG00000008658ENSMUST00000056416ENSMUST00000115841ENSMUSG00000022544ENSMUST00000064635ENSMUST00000139584ENSMUSG00000087168ENSMUST00000140000ENSMUSG00000101481ENSMUST00000190515
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000033011 ENST00000262374 N/A N/A N/A N/A N/A N/A N/A N/A 0.784±0.00 N/A N/A N/A N/A N/A
ENST00000544428 N/A N/A 1.531±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 7.813±5.16 9.764±2.38 7.254±0.00
ENST00000586840 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.849±0.00 N/A N/A N/A N/A
ENST00000588623 N/A N/A N/A N/A N/A 1.284±0.00 N/A N/A N/A 0.494±0.00 N/A N/A N/A N/A
ENST00000591783 5.325±0.00 N/A N/A N/A N/A N/A N/A 2.011±0.00 N/A N/A 1.301±0.00 7.355±1.64 13.769±0.00 17.014±0.00
ENST00000591822 2.466±0.00 10.148±0.00 N/A N/A 5.848±0.00 2.749±0.00 N/A 5.812±0.00 6.488±0.00 N/A N/A N/A 4.105±0.00 6.414±0.00
ENST00000591961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592661 N/A N/A N/A N/A N/A 1.492±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000078328 ENST00000311745 0.004±0.00 N/A 0.035±0.00 6.570±0.00 N/A 0.090±0.00 3.975±0.00 0.076±0.00 0.082±0.00 N/A N/A 0.115±0.00 N/A 0.321±0.00
ENST00000340209 N/A N/A N/A N/A 0.071±0.00 N/A 1.338±0.12 N/A N/A N/A 9.257±8.05 N/A 0.091±0.00 N/A
ENST00000355637 N/A N/A N/A N/A 0.203±0.00 N/A 2.928±0.84 N/A N/A N/A 15.909±11.90 N/A N/A 0.115±0.00
ENST00000422070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436368 N/A N/A N/A N/A 0.222±0.00 N/A 4.872±0.00 N/A N/A N/A 3.842±0.00 N/A N/A N/A
ENST00000535565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547372 0.004±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A
ENST00000547427 N/A N/A 0.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550418 N/A N/A N/A 6.811±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.046±0.00 N/A
ENST00000551752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.578±0.00
ENST00000553186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.442±0.00 N/A
ENST00000569889 N/A N/A N/A N/A 1.048±0.00 0.461±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620507 N/A N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A 0.012±0.00 N/A
ENSG00000118894 ENST00000427587 N/A N/A N/A N/A N/A 0.935±0.00 N/A N/A 3.690±0.00 N/A N/A 10.922±6.55 4.114±1.15 8.091±0.00
ENST00000458008 N/A N/A N/A N/A N/A 1.409±0.00 0.587±0.00 3.620±0.00 N/A 1.758±0.00 8.660±0.00 3.248±0.00 N/A 4.021±0.00
ENST00000585436 2.396±0.00 N/A N/A N/A 2.029±0.00 1.780±0.00 N/A 4.970±0.00 1.007±0.00 1.799±0.00 N/A 9.204±7.30 4.716±1.14 6.254±0.00
ENST00000585975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.660±0.00
ENSG00000200869 ENST00000363999 N/A N/A N/A 0.794±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240419 ENST00000495947 N/A N/A N/A 0.160±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242278 ENST00000470389 0.041±0.00 0.084±0.00 N/A 0.142±0.08 0.313±0.29 0.025±0.00 N/A 0.081±0.00 0.012±0.00 0.013±0.00 0.012±0.00 0.015±0.00 N/A 0.037±0.00
ENSG00000257180 ENST00000549303 0.043±0.00 0.179±0.00 N/A 0.086±0.00 0.117±0.04 0.012±0.00 0.026±0.00 0.013±0.00 N/A 0.034±0.00 N/A 0.076±0.00 N/A 0.142±0.00
ENSG00000259963 ENST00000567192 N/A N/A N/A 0.302±0.00 N/A 3.965±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260411 ENST00000585867 0.032±0.00 0.204±0.00 N/A N/A 0.419±0.00 0.128±0.04 N/A 0.060±0.00 0.025±0.00 N/A N/A 0.057±0.00 N/A 0.206±0.00
ENSG00000260431 ENST00000565115 N/A 0.212±0.00 N/A N/A N/A N/A 0.337±0.00 N/A N/A N/A N/A 0.220±0.00 N/A N/A
ENSG00000260817 ENST00000570238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.070±0.00
ENSG00000260835 ENST00000564076 N/A N/A N/A 0.093±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.485±0.00
ENSG00000261007 ENST00000564888 0.049±0.00 0.013±0.00 0.078±0.00 0.083±0.00 1.262±0.00 N/A 0.012±0.00 N/A 0.174±0.00 0.012±0.00 0.046±0.00 N/A N/A 0.026±0.00
ENSG00000261198 ENST00000565247 N/A N/A N/A 0.067±0.00 N/A N/A 0.079±0.06 N/A N/A N/A N/A N/A N/A N/A
ENSG00000261811 ENST00000566684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.200±0.00
ENSG00000267070 ENST00000589323 0.139±0.00 0.146±0.00 N/A 0.201±0.00 0.341±0.00 0.276±0.00 0.033±0.00 0.037±0.00 N/A 0.102±0.00 N/A 0.258±0.14 0.132±0.00 0.390±0.08
ENSG00000267182 ENST00000588011 N/A N/A N/A N/A 1.265±0.00 1.720±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000273963 ENST00000621765 N/A 0.019±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A 0.094±0.00
ENSG00000278975 ENST00000623206 N/A N/A 0.039±0.00 0.323±0.26 0.601±0.00 N/A N/A 0.036±0.00 0.264±0.00 N/A N/A N/A N/A 0.051±0.00
ENSG00000279877 ENST00000569895 0.064±0.00 N/A 0.172±0.00 N/A N/A N/A N/A 0.133±0.00 0.403±0.00 0.160±0.00 N/A 0.145±0.11 0.066±0.02 N/A
ENSG00000280000 ENST00000624136 0.172±0.00 0.191±0.00 N/A 0.171±0.11 0.080±0.00 0.223±0.15 0.048±0.00 0.126±0.00 0.044±0.00 0.087±0.00 0.005±0.00 0.037±0.00 N/A 0.089±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008658 ENSMUST00000056416 0.016±0.00 0.102±0.01 N/A 16.709±7.12 1.061±0.76 0.043±0.01 4.385±1.21 0.238±0.06 0.022±0.01 0.608±0.21 43.636±2.26 0.080±0.03 0.010±0.00 0.037±0.02
ENSMUST00000115841 0.066±0.03 1.086±0.28 0.073±0.00 28.821±19.05 2.353±3.77 0.766±0.20 4.539±0.00 1.924±0.19 0.050±0.01 0.880±0.22 N/A 1.044±0.28 0.047±0.00 0.150±0.08
ENSMUSG00000022544 ENSMUST00000064635 15.217±2.14 24.914±4.22 15.098±0.64 4.583±1.25 17.486±2.78 14.563±1.22 6.953±1.21 19.560±1.74 6.693±1.97 15.415±0.82 3.585±0.23 13.782±5.68 10.046±1.97 6.527±0.27
ENSMUST00000129729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139584 10.962±0.84 23.479±0.00 N/A N/A N/A 11.989±0.90 N/A N/A 11.497±0.00 N/A N/A 22.398±4.20 N/A 13.002±1.44
ENSMUST00000140718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087168 ENSMUST00000140000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.432±0.02 N/A 1.151±0.00 0.326±0.00
ENSMUSG00000101481 ENSMUST00000190515 N/A N/A N/A 0.110±0.07 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.084±0.03

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