C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 4b (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000009907 Vps4b 10090 - 1:106764071-106796728 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000094646 Vps4b-001 106769430-106796728 protein_coding
  ENSMUST00000112736 Vps4b-002 106764071-106796667 protein_coding
  ENSMUST00000126057 Vps4b-003 106791100-106796577 retained_intron
  ENSMUST00000127606 Vps4b-004 106785804-106789949 processed_transcript
  ENSMUST00000147705 Vps4b-005 106777298-106782794 retained_intron
  ENSMUST00000190531 Vps4b-006 106779441-106780624 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000094646ENSMUST00000112736ENSMUST00000147705
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000094646 9.149±2.84 28.387±17.90 17.290±2.44 5.239±1.65 12.201±5.18 22.342±7.80 3.307±0.24 9.858±1.26 8.806±2.48 14.247±2.44 2.933±0.23 20.277±5.89 9.742±3.41 3.353±0.92
ENSMUST00000112736 N/A N/A N/A N/A 1.316±0.00 2.419±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147705 N/A N/A N/A 17.872±0.00 N/A N/A N/A N/A N/A N/A 4.126±0.56 40.655±3.49 30.857±8.44 12.075±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000B7 CIL_0000B7_0003 CGP 1:106720459-106796728
CIL_00076J CIL_00076J_0002 CGP 1:106764071-106883348

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005764 IEA lysosome
GO:0005768 ISO endosome
GO:0005769 IEA early endosome
GO:0005770 IEA late endosome
GO:0005774 IEA vacuolar membrane
GO:0005829 IDA cytosol
GO:0006200 IEA ATP catabolic process
GO:0006813 IDA potassium ion transport
GO:0007032 IMP endosome organization
GO:0007049 IEA cell cycle
GO:0008022 IEA protein C-terminus binding
GO:0010008 IEA endosome membrane
GO:0015031 IEA protein transport
GO:0016197 ISO endosomal transport
GO:0016887 ISO ATPase activity
GO:0030301 IMP cholesterol transport
GO:0032367 IEA intracellular cholesterol transport
GO:0032510 IEA endosome to lysosome transport via multivesicular body sorting pathway
GO:0033993 IEA response to lipid
GO:0050792 IEA regulation of viral process
GO:0051301 IEA cell division
GO:0070062 IEA extracellular vesicular exosome
GO:1902188 IEA positive regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069175 vps4b vacuolar protein sorting 4b (yeast) protein_coding Danio_rerio
ENSG00000119541 VPS4B vacuolar protein sorting 4 homolog B (S. cerevisiae) protein_coding Homo_sapiens

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