C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 4b (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000094646 Vps4b-001 ENSMUSG00000009907 10090 - 1:106769430-106796728 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000094646
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000094646 9.149±2.84 28.387±17.90 17.290±2.44 5.239±1.65 12.201±5.18 22.342±7.80 3.307±0.24 9.858±1.26 8.806±2.48 14.247±2.44 2.933±0.23 20.277±5.89 9.742±3.41 3.353±0.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000B7 CIL_0000B7_0003 CGP 1:106720459-106796728
CIL_00076J CIL_00076J_0002 CGP 1:106764071-106883348

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005764 IEA lysosome
GO:0005768 ISO endosome
GO:0005769 IEA early endosome
GO:0005770 IEA late endosome
GO:0005774 IEA vacuolar membrane
GO:0005829 IDA cytosol
GO:0006200 IEA ATP catabolic process
GO:0006813 IDA potassium ion transport
GO:0007032 IMP endosome organization
GO:0007049 IEA cell cycle
GO:0008022 IEA protein C-terminus binding
GO:0010008 IEA endosome membrane
GO:0015031 IEA protein transport
GO:0016197 ISO endosomal transport
GO:0016887 ISO ATPase activity
GO:0030301 IMP cholesterol transport
GO:0032367 IEA intracellular cholesterol transport
GO:0032510 IEA endosome to lysosome transport via multivesicular body sorting pathway
GO:0033993 IEA response to lipid
GO:0050792 IEA regulation of viral process
GO:0051301 IEA cell division
GO:0070062 IEA extracellular vesicular exosome
GO:1902188 IEA positive regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000238497 VPS4B-001 protein_coding Homo_sapiens 0 1683
ENST00000588059 VPS4B-004 nonsense_mediated_decay Homo_sapiens 0 335
ENST00000589604 VPS4B-005 retained_intron Homo_sapiens 0 918
ENST00000591383 VPS4B-007 processed_transcript Homo_sapiens 0 632
ENST00000591475 VPS4B-006 retained_intron Homo_sapiens 0 1363
ENST00000591519 VPS4B-003 protein_coding Homo_sapiens 0 451

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