C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear RNA export factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000010097 Nxf1 10090 + 19:8757073-8772475 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000010241 Nxf1-001 8757073-8770922 protein_coding
  ENSMUST00000010248 Nxf1-201 8770996-8772475 protein_coding
  ENSMUST00000183780 Nxf1-009 8757119-8767613 processed_transcript
  ENSMUST00000183898 Nxf1-008 8770092-8770921 processed_transcript
  ENSMUST00000183939 Nxf1-003 8757150-8765291 protein_coding
  ENSMUST00000184387 Nxf1-005 8767011-8767887 retained_intron
  ENSMUST00000184663 Nxf1-004 8764934-8767396 protein_coding
  ENSMUST00000184756 Nxf1-011 8757150-8763739 nonsense_mediated_decay
  ENSMUST00000184808 Nxf1-007 8770136-8770862 retained_intron
  ENSMUST00000184826 Nxf1-010 8768635-8770849 protein_coding
  ENSMUST00000184970 Nxf1-002 8757107-8772456 protein_coding
  ENSMUST00000185056 Nxf1-006 8766677-8769167 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000010241ENSMUST00000010248ENSMUST00000183939ENSMUST00000184756ENSMUST00000184970
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000010241 N/A N/A 51.530±0.58 41.765±1.67 22.990±0.00 8.345±0.00 9.700±0.00 9.687±0.77 25.770±25.06 N/A 6.353±1.28 31.729±7.23 29.795±9.91 26.610±10.53
ENSMUST00000010248 97.754±15.92 167.337±14.60 N/A 119.691±2.28 117.175±9.84 62.278±8.95 82.651±7.28 105.663±14.49 43.002±9.51 87.290±2.69 59.768±6.35 123.674±23.74 27.797±0.58 N/A
ENSMUST00000183939 N/A N/A N/A 27.906±0.00 N/A N/A N/A N/A N/A N/A N/A 53.098±0.00 60.868±4.68 28.629±0.00
ENSMUST00000184756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 61.131±0.00 57.759±0.00 78.797±0.00
ENSMUST00000184970 N/A 19.910±0.78 34.506±0.00 33.307±5.73 6.342±0.27 5.485±0.01 N/A 12.763±0.35 9.405±4.86 8.989±1.62 N/A 11.420±6.15 7.417±3.42 14.772±9.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0002 VISTA 19:8644197-9245760

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000346 ISS transcription export complex
GO:0003674 ND molecular_function
GO:0003723 IDA RNA binding
GO:0003729 IDA mRNA binding
GO:0005487 IDA nucleocytoplasmic transporter activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005643 IDA nuclear pore
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006405 IDA RNA export from nucleus
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0016607 ISS nuclear speck
GO:0016973 IPI poly(A)+ mRNA export from nucleus
GO:0042405 IDA nuclear inclusion body
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055076 nxf1 nuclear RNA export factor 1 protein_coding Danio_rerio
ENSDARG00000086017 NXF1 (2 of 4) protein_coding Danio_rerio
ENSDARG00000089034 NXF1 (3 of 4) protein_coding Danio_rerio
ENSDARG00000095404 NXF1 (4 of 4) protein_coding Danio_rerio
ENSG00000162231 NXF1 nuclear RNA export factor 1 protein_coding Homo_sapiens

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