C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 25
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000010608 Rbm25 10090 + 12:83631236-83683123 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048155 Rbm25-002 83632252-83683123 protein_coding
  ENSMUST00000181983 Rbm25-003 83631236-83674417 protein_coding
  ENSMUST00000182004 Rbm25-007 83631339-83646232 protein_coding
  ENSMUST00000182032 Rbm25-005 83648302-83652107 retained_intron
  ENSMUST00000182036 Rbm25-009 83632291-83659464 protein_coding
  ENSMUST00000182255 Rbm25-004 83642699-83668483 retained_intron
  ENSMUST00000182347 Rbm25-011 83632306-83642698 protein_coding
  ENSMUST00000182450 Rbm25-020 83642639-83682020 nonsense_mediated_decay
  ENSMUST00000182618 Rbm25-012 83632253-83651371 protein_coding
  ENSMUST00000182633 Rbm25-010 83632326-83663999 nonsense_mediated_decay
  ENSMUST00000182840 Rbm25-015 83674525-83676111 processed_transcript
  ENSMUST00000182881 Rbm25-017 83634770-83639377 retained_intron
  ENSMUST00000183039 Rbm25-021 83646182-83651750 processed_transcript
  ENSMUST00000183128 Rbm25-013 83642554-83651390 retained_intron
  ENSMUST00000183154 Rbm25-008 83632257-83646230 protein_coding
  ENSMUST00000183181 Rbm25-016 83674853-83677898 retained_intron
  ENSMUST00000183242 Rbm25-006 83658525-83659584 retained_intron
  ENSMUST00000183282 Rbm25-014 83662976-83663999 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048155ENSMUST00000181983ENSMUST00000182255ENSMUST00000182450ENSMUST00000183154
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048155 4.902±2.62 13.290±6.93 18.249±2.63 20.201±1.35 4.571±1.42 2.805±0.32 3.678±0.56 5.221±1.17 10.147±8.10 4.181±1.96 9.735±0.67 10.345±10.75 23.807±7.31 6.329±1.39
ENSMUST00000181983 N/A N/A N/A 72.385±0.00 N/A N/A N/A N/A N/A N/A N/A 98.684±0.00 80.774±37.22 274.014±0.00
ENSMUST00000182255 4.374±0.00 N/A 5.582±0.00 7.594±0.00 2.470±0.20 2.326±0.61 N/A 1.692±0.13 4.052±1.74 N/A 1.781±0.37 5.513±2.77 9.512±2.32 3.498±0.86
ENSMUST00000182450 N/A 6.574±1.82 N/A 36.538±0.00 2.524±0.26 2.539±0.78 N/A 2.037±0.00 1.915±0.75 2.545±0.00 N/A 10.430±17.55 70.806±21.24 25.900±35.97
ENSMUST00000183154 N/A 21.085±1.20 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P0 CIL_0008P0_0002 VISTA 12:83418739-84022790
CIL_0001TO CIL_0001TO_0002 CGP 12:83546941-83683123
CIL_0003OW CIL_0003OW_0002 CGP 12:83631236-83735199

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003729 ISS mRNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0006915 IEA apoptotic process
GO:0008380 IEA RNA splicing
GO:0016607 ISS nuclear speck
GO:0042981 ISS regulation of apoptotic process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006395 rbm25 RNA binding motif protein 25 protein_coding Danio_rerio
ENSDARG00000039266 RBM25 (2 of 2) RNA binding motif protein 25 protein_coding Danio_rerio
ENSG00000119707 RBM25 RNA binding motif protein 25 protein_coding Homo_sapiens

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