C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048155 Rbm25-002 ENSMUSG00000010608 10090 + 12:83632252-83683123 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048155
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048155 4.902±2.62 13.290±6.93 18.249±2.63 20.201±1.35 4.571±1.42 2.805±0.32 3.678±0.56 5.221±1.17 10.147±8.10 4.181±1.96 9.735±0.67 10.345±10.75 23.807±7.31 6.329±1.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P0 CIL_0008P0_0002 VISTA 12:83418739-84022790
CIL_0001TO CIL_0001TO_0002 CGP 12:83546941-83683123
CIL_0003OW CIL_0003OW_0002 CGP 12:83631236-83735199

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0003729 ISS mRNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0006915 IEA apoptotic process
GO:0008380 IEA RNA splicing
GO:0016607 ISS nuclear speck
GO:0042981 ISS regulation of apoptotic process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261973 RBM25-001 protein_coding Homo_sapiens 0 4235
ENST00000525161 RBM25-011 protein_coding Homo_sapiens 0 536
ENST00000525321 RBM25-005 protein_coding Homo_sapiens 0 1301
ENST00000526754 RBM25-006 protein_coding Homo_sapiens 0 1301
ENST00000527432 RBM25-007 protein_coding Homo_sapiens 0 4104
ENST00000527449 RBM25-009 retained_intron Homo_sapiens 0 1339
ENST00000528081 RBM25-008 nonsense_mediated_decay Homo_sapiens 0 3251
ENST00000530978 RBM25-002 retained_intron Homo_sapiens 0 340
ENST00000531500 RBM25-010 protein_coding Homo_sapiens 0 985
ENST00000532483 RBM25-003 processed_transcript Homo_sapiens 0 773
ENST00000532683 RBM25-004 retained_intron Homo_sapiens 0 1600

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