C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 25
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119707 RBM25 9606 + 14:73058436-73123898 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261973 RBM25-001 73058436-73123898 protein_coding
  ENST00000525161 RBM25-011 73058668-73083551 protein_coding
  ENST00000525321 RBM25-005 73058547-73101179 protein_coding
  ENST00000526754 RBM25-006 73058549-73101179 protein_coding
  ENST00000527432 RBM25-007 73058532-73120391 protein_coding
  ENST00000527449 RBM25-009 73107302-73121313 retained_intron
  ENST00000528081 RBM25-008 73071637-73120229 nonsense_mediated_decay
  ENST00000530978 RBM25-002 73109131-73110909 retained_intron
  ENST00000531500 RBM25-010 73058533-73097100 protein_coding
  ENST00000532192 RBM25-012 73097036-73100995 protein_coding
  ENST00000532483 RBM25-003 73106280-73114333 processed_transcript
  ENST00000532683 RBM25-004 73058542-73120129 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261973ENST00000525321ENST00000526754ENST00000527432ENST00000527449ENST00000528081ENST00000532483ENST00000532683
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261973 N/A N/A 0.362±0.00 2.150±1.08 1.248±0.00 2.142±0.00 1.278±0.00 1.316±0.00 0.771±0.00 1.819±0.00 1.169±0.79 2.440±0.38 0.926±0.10 1.846±0.00
ENST00000525321 N/A N/A 3.631±0.00 3.444±0.00 12.071±0.00 7.861±0.00 2.310±0.00 2.549±0.00 5.146±0.00 10.961±0.00 N/A 8.095±0.00 N/A N/A
ENST00000526754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.723±0.00 N/A N/A N/A
ENST00000527432 N/A 9.204±0.00 N/A 7.811±0.00 5.171±0.00 5.762±0.00 4.675±0.00 4.389±0.00 2.155±0.00 N/A 8.591±0.00 13.385±1.14 7.886±5.10 31.194±0.00
ENST00000527449 N/A N/A 1.581±0.00 1.821±0.00 4.140±0.00 3.058±0.64 1.379±0.00 2.339±0.00 1.869±0.60 4.937±0.00 N/A 3.002±0.00 2.177±0.10 N/A
ENST00000528081 6.762±0.00 11.736±0.00 N/A 9.099±0.00 N/A 4.267±0.00 1.794±0.00 N/A N/A N/A N/A 7.168±0.00 N/A 7.852±0.00
ENST00000532483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.576±0.00 N/A N/A N/A
ENST00000532683 1.498±0.00 2.979±0.00 1.198±0.00 1.953±1.35 1.654±0.21 N/A 0.649±0.00 1.384±0.00 0.854±0.56 2.222±0.00 N/A 5.260±0.00 N/A 11.383±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P0 CIL_0008P0_0001 VISTA 14:72878760-73482269
CIL_0001TO CIL_0001TO_0001 CGP 14:72969451-73123898
CIL_0003OW CIL_0003OW_0001 CGP 14:73058436-73223691

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005681 IBA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0042981 IDA regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006395 rbm25 RNA binding motif protein 25 protein_coding Danio_rerio
ENSDARG00000039266 RBM25 (2 of 2) RNA binding motif protein 25 protein_coding Danio_rerio
ENSMUSG00000010608 Rbm25 RNA binding motif protein 25 protein_coding Mus_musculus

Loading