C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000181983 Rbm25-003 ENSMUSG00000010608 10090 + 12:83631236-83674417 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000181983
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000181983 72.385±0.00 98.684±0.00 80.774±37.22 274.014±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P0 CIL_0008P0_0002 VISTA 12:83418739-84022790
CIL_0001TO CIL_0001TO_0002 CGP 12:83546941-83683123
CIL_0003OW CIL_0003OW_0002 CGP 12:83631236-83735199

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261973 RBM25-001 protein_coding Homo_sapiens 0 2436
ENST00000525161 RBM25-011 protein_coding Homo_sapiens 0 534
ENST00000525321 RBM25-005 protein_coding Homo_sapiens 0 1182
ENST00000526754 RBM25-006 protein_coding Homo_sapiens 0 1184
ENST00000527432 RBM25-007 protein_coding Homo_sapiens 0 2436
ENST00000527449 RBM25-009 retained_intron Homo_sapiens 0 425
ENST00000528081 RBM25-008 nonsense_mediated_decay Homo_sapiens 0 1703
ENST00000530978 RBM25-002 retained_intron Homo_sapiens 0 340
ENST00000531500 RBM25-010 protein_coding Homo_sapiens 0 983
ENST00000532483 RBM25-003 processed_transcript Homo_sapiens 0 435
ENST00000532683 RBM25-004 retained_intron Homo_sapiens 0 1258

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