C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003OW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000119707-ENSG00000080815 CGP 9606 14:73058436-73223691
GeneTranscriptPositionBiotype
ENSG00000080815 (PSEN1)
presenilin 1 		ENST00000324501 (PSEN1-001) 73136447-73223691 protein_coding
ENST00000357710 (PSEN1-002) 73136447-73220401 protein_coding
ENST00000394157 (PSEN1-004) 73136447-73174204 protein_coding
ENST00000394164 (PSEN1-003) 73136817-73220401 protein_coding
ENST00000406768 (PSEN1-005) 73167829-73220401 protein_coding
ENST00000553447 (PSEN1-019) 73136477-73170884 processed_transcript
ENST00000553599 (PSEN1-012) 73136445-73170996 protein_coding
ENST00000553719 (PSEN1-016) 73136444-73173680 protein_coding
ENST00000553855 (PSEN1-024) 73148020-73217158 nonsense_mediated_decay
ENST00000554131 (PSEN1-020) 73136496-73171036 protein_coding
ENST00000554995 (PSEN1-023) 73197710-73211853 retained_intron
ENST00000555254 (PSEN1-021) 73136456-73173694 protein_coding
ENST00000555386 (PSEN1-006) 73148020-73219289 nonsense_mediated_decay
ENST00000555867 (PSEN1-022) 73206153-73219396 retained_intron
ENST00000556011 (PSEN1-026) 73136447-73160049 protein_coding
ENST00000556066 (PSEN1-011) 73147492-73170895 protein_coding
ENST00000556533 (PSEN1-009) 73136435-73170998 protein_coding
ENST00000556864 (PSEN1-007) 73136435-73170912 protein_coding
ENST00000556951 (PSEN1-014) 73136436-73170994 protein_coding
ENST00000557037 (PSEN1-008) 73136541-73170909 protein_coding
ENST00000557293 (PSEN1-015) 73136437-73171007 protein_coding
ENST00000557356 (PSEN1-013) 73136418-73173644 protein_coding
ENST00000557511 (PSEN1-027) 73148020-73219289 protein_coding
ENST00000559361 (PSEN1-029) 73136518-73173707 nonsense_mediated_decay
ENST00000560005 (PSEN1-028) 73136451-73171050 protein_coding
ENSG00000119707 (RBM25)
RNA binding motif protein 25 		ENST00000261973 (RBM25-001) 73058436-73123898 protein_coding
ENST00000525161 (RBM25-011) 73058668-73083551 protein_coding
ENST00000525321 (RBM25-005) 73058547-73101179 protein_coding
ENST00000526754 (RBM25-006) 73058549-73101179 protein_coding
ENST00000527432 (RBM25-007) 73058532-73120391 protein_coding
ENST00000527449 (RBM25-009) 73107302-73121313 retained_intron
ENST00000528081 (RBM25-008) 73071637-73120229 nonsense_mediated_decay
ENST00000530978 (RBM25-002) 73109131-73110909 retained_intron
ENST00000531500 (RBM25-010) 73058533-73097100 protein_coding
ENST00000532192 (RBM25-012) 73097036-73100995 protein_coding
ENST00000532483 (RBM25-003) 73106280-73114333 processed_transcript
ENST00000532683 (RBM25-004) 73058542-73120129 retained_intron
ENSG00000258448 (RP11-109N23.5)
 ENST00000554385 (RP11-109N23.5-001) 73068108-73068618 processed_pseudogene
ENSG00000259109 (RP4-687K1.2)
 ENST00000554078 (RP4-687K1.2-001) 73189763-73190004 processed_pseudogene
ENSG00000274991 (AC004846.1)
 ENST00000616607 (AC004846.1-201) 73208378-73208463 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003OW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000010608-ENSMUSG00000019969 CGP 10090 12:83631236-83735199
GeneTranscriptPositionBiotype
ENSMUSG00000010608 (Rbm25)
RNA binding motif protein 25 		ENSMUST00000048155 (Rbm25-002) 83632252-83683123 protein_coding
ENSMUST00000181983 (Rbm25-003) 83631236-83674417 protein_coding
ENSMUST00000182004 (Rbm25-007) 83631339-83646232 protein_coding
ENSMUST00000182032 (Rbm25-005) 83648302-83652107 retained_intron
ENSMUST00000182036 (Rbm25-009) 83632291-83659464 protein_coding
ENSMUST00000182255 (Rbm25-004) 83642699-83668483 retained_intron
ENSMUST00000182347 (Rbm25-011) 83632306-83642698 protein_coding
ENSMUST00000182450 (Rbm25-020) 83642639-83682020 nonsense_mediated_decay
ENSMUST00000182618 (Rbm25-012) 83632253-83651371 protein_coding
ENSMUST00000182633 (Rbm25-010) 83632326-83663999 nonsense_mediated_decay
ENSMUST00000182840 (Rbm25-015) 83674525-83676111 processed_transcript
ENSMUST00000182881 (Rbm25-017) 83634770-83639377 retained_intron
ENSMUST00000183039 (Rbm25-021) 83646182-83651750 processed_transcript
ENSMUST00000183128 (Rbm25-013) 83642554-83651390 retained_intron
ENSMUST00000183154 (Rbm25-008) 83632257-83646230 protein_coding
ENSMUST00000183181 (Rbm25-016) 83674853-83677898 retained_intron
ENSMUST00000183242 (Rbm25-006) 83658525-83659584 retained_intron
ENSMUST00000183282 (Rbm25-014) 83662976-83663999 processed_transcript
ENSMUSG00000019969 (Psen1)
presenilin 1 		ENSMUST00000041806 (Psen1-201) 83688203-83734113 protein_coding
ENSMUST00000101225 (Psen1-202) 83688563-83735199 protein_coding
ENSMUSG00000099708 (RP23-291K4.3)
predicted gene 29361 		ENSMUST00000183323 (RP23-291K4.3-001) 83631834-83633833 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003OW_0001ENSG00000080815ENST00000324501ENST00000357710ENST00000394164ENST00000557511ENSG00000119707ENST00000261973ENST00000525321ENST00000526754ENST00000527432ENST00000527449ENST00000528081ENST00000532483ENST00000532683ENSG00000258448ENST00000554385ENSG00000259109ENST00000554078ENSG00000274991ENST00000616607CIL_0003OW_0002ENSMUSG00000010608ENSMUST00000048155ENSMUST00000181983ENSMUST00000182255ENSMUST00000182450ENSMUST00000183154ENSMUSG00000019969ENSMUST00000041806ENSMUST00000101225ENSMUSG00000099708ENSMUST00000183323
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000080815 ENST00000324501 4.677±0.00 3.123±0.00 N/A 4.981±1.02 2.551±1.12 3.097±0.00 1.272±0.52 3.925±0.00 0.995±0.63 3.005±0.25 1.247±0.00 2.578±1.70 3.265±0.84 3.032±0.01
ENST00000357710 13.539±0.00 7.133±0.00 5.049±0.00 15.613±1.84 11.980±1.00 10.431±0.19 3.237±1.54 11.163±4.82 5.922±0.83 7.403±0.64 5.211±1.58 11.314±2.14 20.410±2.86 23.246±3.23
ENST00000394157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394164 N/A 2.863±0.00 N/A N/A N/A N/A N/A N/A N/A 2.383±0.00 N/A N/A N/A N/A
ENST00000406768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554995 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557511 N/A N/A N/A N/A N/A N/A N/A 4.020±0.00 N/A N/A N/A N/A N/A N/A
ENST00000559361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000119707 ENST00000261973 N/A N/A 0.362±0.00 2.150±1.08 1.248±0.00 2.142±0.00 1.278±0.00 1.316±0.00 0.771±0.00 1.819±0.00 1.169±0.79 2.440±0.38 0.926±0.10 1.846±0.00
ENST00000525161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525321 N/A N/A 3.631±0.00 3.444±0.00 12.071±0.00 7.861±0.00 2.310±0.00 2.549±0.00 5.146±0.00 10.961±0.00 N/A 8.095±0.00 N/A N/A
ENST00000526754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.723±0.00 N/A N/A N/A
ENST00000527432 N/A 9.204±0.00 N/A 7.811±0.00 5.171±0.00 5.762±0.00 4.675±0.00 4.389±0.00 2.155±0.00 N/A 8.591±0.00 13.385±1.14 7.886±5.10 31.194±0.00
ENST00000527449 N/A N/A 1.581±0.00 1.821±0.00 4.140±0.00 3.058±0.64 1.379±0.00 2.339±0.00 1.869±0.60 4.937±0.00 N/A 3.002±0.00 2.177±0.10 N/A
ENST00000528081 6.762±0.00 11.736±0.00 N/A 9.099±0.00 N/A 4.267±0.00 1.794±0.00 N/A N/A N/A N/A 7.168±0.00 N/A 7.852±0.00
ENST00000530978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.576±0.00 N/A N/A N/A
ENST00000532683 1.498±0.00 2.979±0.00 1.198±0.00 1.953±1.35 1.654±0.21 N/A 0.649±0.00 1.384±0.00 0.854±0.56 2.222±0.00 N/A 5.260±0.00 N/A 11.383±0.00
ENSG00000258448 ENST00000554385 0.022±0.00 0.131±0.00 N/A N/A 0.021±0.00 0.372±0.00 0.075±0.00 0.320±0.00 0.018±0.00 N/A N/A 0.057±0.00 N/A N/A
ENSG00000259109 ENST00000554078 N/A 0.171±0.00 N/A 0.386±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000274991 ENST00000616607 N/A 1.944±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.905±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000010608 ENSMUST00000048155 4.902±2.62 13.290±6.93 18.249±2.63 20.201±1.35 4.571±1.42 2.805±0.32 3.678±0.56 5.221±1.17 10.147±8.10 4.181±1.96 9.735±0.67 10.345±10.75 23.807±7.31 6.329±1.39
ENSMUST00000181983 N/A N/A N/A 72.385±0.00 N/A N/A N/A N/A N/A N/A N/A 98.684±0.00 80.774±37.22 274.014±0.00
ENSMUST00000182004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182255 4.374±0.00 N/A 5.582±0.00 7.594±0.00 2.470±0.20 2.326±0.61 N/A 1.692±0.13 4.052±1.74 N/A 1.781±0.37 5.513±2.77 9.512±2.32 3.498±0.86
ENSMUST00000182347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182450 N/A 6.574±1.82 N/A 36.538±0.00 2.524±0.26 2.539±0.78 N/A 2.037±0.00 1.915±0.75 2.545±0.00 N/A 10.430±17.55 70.806±21.24 25.900±35.97
ENSMUST00000182618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182840 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183154 N/A 21.085±1.20 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000019969 ENSMUST00000041806 3.246±1.15 5.380±1.65 4.223±0.00 4.209±0.91 5.022±1.16 12.472±2.44 2.224±0.23 3.337±0.22 2.169±0.68 4.582±0.51 2.211±0.36 6.973±3.13 12.364±5.66 21.665±4.47
ENSMUST00000101225 9.153±1.68 7.541±1.21 8.212±2.18 9.614±1.99 4.469±1.82 19.605±2.78 2.996±1.33 8.817±1.09 3.314±1.52 8.442±1.42 2.597±1.56 5.519±5.29 19.437±13.91 32.668±1.68
ENSMUSG00000099708 ENSMUST00000183323 N/A 1.474±0.48 N/A N/A 1.494±0.12 1.121±0.17 N/A N/A N/A N/A N/A 1.240±0.11 N/A 3.569±0.00

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