C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transportin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000012535 Tnpo3 10090 - 6:29540827-29609887 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000012679 Tnpo3-001 29540827-29609887 protein_coding
  ENSMUST00000115251 Tnpo3-201 29540827-29609607 protein_coding
  ENSMUST00000164325 Tnpo3-008 29583343-29609634 retained_intron
  ENSMUST00000166844 Tnpo3-003 29589088-29609613 nonsense_mediated_decay
  ENSMUST00000167056 Tnpo3-004 29578552-29582386 retained_intron
  ENSMUST00000169302 Tnpo3-007 29564877-29609623 retained_intron
  ENSMUST00000170350 Tnpo3-002 29541571-29609811 nonsense_mediated_decay
  ENSMUST00000170634 Tnpo3-009 29580053-29609819 retained_intron
  ENSMUST00000170647 Tnpo3-005 29540982-29560094 protein_coding
  ENSMUST00000171865 Tnpo3-006 29554883-29557065 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000012679ENSMUST00000115251ENSMUST00000166844ENSMUST00000170350ENSMUST00000170647
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000012679 12.347±2.11 3.201±0.00 21.090±1.80 11.661±4.42 10.461±2.45 10.158±0.61 7.790±2.01 11.699±2.03 11.756±6.45 10.860±1.08 10.178±2.54 7.578±2.74 14.147±6.78 9.772±3.43
ENSMUST00000115251 N/A 5.918±0.97 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.865±3.15 N/A N/A
ENSMUST00000166844 N/A 34.790±8.01 N/A N/A N/A 20.250±0.00 N/A N/A N/A N/A N/A 32.599±5.53 N/A N/A
ENSMUST00000170350 5.380±1.53 4.780±1.41 N/A 6.566±2.11 6.690±2.69 3.824±0.90 4.000±1.35 3.756±0.00 N/A 5.915±0.75 3.400±0.09 7.818±2.72 9.864±4.41 2.403±0.63
ENSMUST00000170647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.917±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YB CIL_0001YB_0002 CGP 6:29526625-29609887
CIL_0001YG CIL_0001YG_0002 CGP 6:29540827-29718559

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0035048 ISS splicing factor protein import into nucleus
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045680 tnpo3 transportin 3 protein_coding Danio_rerio
ENSG00000064419 TNPO3 transportin 3 protein_coding Homo_sapiens

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