C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transportin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170350 Tnpo3-002 ENSMUSG00000012535 10090 - 6:29541571-29609811 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENSMUST00000170350
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000170350 5.380±1.53 4.780±1.41 6.566±2.11 6.690±2.69 3.824±0.90 4.000±1.35 3.756±0.00 5.915±0.75 3.400±0.09 7.818±2.72 9.864±4.41 2.403±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YB CIL_0001YB_0002 CGP 6:29526625-29609887
CIL_0001YG CIL_0001YG_0002 CGP 6:29540827-29718559

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265388 TNPO3-001 protein_coding Homo_sapiens 0 3864
ENST00000402760 RP4-753D5.3-001 processed_pseudogene Homo_sapiens 0 542
ENST00000471166 TNPO3-005 protein_coding Homo_sapiens 0 1873
ENST00000471234 TNPO3-003 protein_coding Homo_sapiens 0 1827
ENST00000482320 TNPO3-002 protein_coding Homo_sapiens 0 4440
ENST00000603089 CTD-2230M5.3-001 processed_pseudogene Homo_sapiens 0 645

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