C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transportin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000012679 Tnpo3-001 ENSMUSG00000012535 10090 - 6:29540827-29609887 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000012679
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000012679 12.347±2.11 3.201±0.00 21.090±1.80 11.661±4.42 10.461±2.45 10.158±0.61 7.790±2.01 11.699±2.03 11.756±6.45 10.860±1.08 10.178±2.54 7.578±2.74 14.147±6.78 9.772±3.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YB CIL_0001YB_0002 CGP 6:29526625-29609887
CIL_0001YG CIL_0001YG_0002 CGP 6:29540827-29718559

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0035048 ISS splicing factor protein import into nucleus
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265388 TNPO3-001 protein_coding Homo_sapiens 0 4132
ENST00000402760 RP4-753D5.3-001 processed_pseudogene Homo_sapiens 0 542
ENST00000471166 TNPO3-005 protein_coding Homo_sapiens 0 1903
ENST00000471234 TNPO3-003 protein_coding Homo_sapiens 0 2141
ENST00000482320 TNPO3-002 protein_coding Homo_sapiens 0 3864
ENST00000603089 CTD-2230M5.3-001 processed_pseudogene Homo_sapiens 0 645

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