C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal recognition particle 19
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000014504 Srp19 10090 + 18:34330847-34336599 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000072576 Srp19-001 34331145-34336599 protein_coding
  ENSMUST00000119329 Srp19-006 34331158-34336421 protein_coding
  ENSMUST00000126518 Srp19-004 34330847-34336345 processed_transcript
  ENSMUST00000131713 Srp19-005 34331123-34336521 processed_transcript
  ENSMUST00000140279 Srp19-002 34331145-34336551 retained_intron
  ENSMUST00000142010 Srp19-003 34331176-34336553 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072576ENSMUST00000119329ENSMUST00000126518ENSMUST00000131713ENSMUST00000140279
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072576 6.175±0.45 4.173±0.00 24.428±2.51 15.540±7.28 4.272±1.08 4.947±0.75 8.410±0.64 5.600±0.64 22.728±20.58 5.034±0.66 18.031±1.54 5.271±1.94 29.288±15.26 10.231±4.34
ENSMUST00000119329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.594±4.65 N/A
ENSMUST00000126518 N/A N/A N/A 5.730±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.154±0.00
ENSMUST00000131713 N/A N/A N/A N/A N/A N/A N/A N/A 1.822±0.11 N/A 9.071±1.78 34.341±1.64 37.650±13.46 5.159±1.96
ENSMUST00000140279 1.176±0.60 2.237±0.72 3.034±0.46 2.023±1.14 1.297±0.22 1.611±0.28 0.950±0.12 0.733±0.15 2.158±1.18 1.938±0.31 0.671±0.00 1.927±0.62 1.428±0.79 0.994±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UN CIL_0004UN_0002 CGP 18:34330847-34373415

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0048500 IEA signal recognition particle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035699 srp19 signal recognition particle 19 protein_coding Danio_rerio
ENSG00000153037 SRP19 signal recognition particle 19kDa protein_coding Homo_sapiens
ENSG00000272869 CTC-487M23.8 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000424153} protein_coding Homo_sapiens

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