C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119329 Srp19-006 ENSMUSG00000014504 10090 + 18:34331158-34336421 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000119329
Transcript ID Placenta
ENSMUST00000119329 12.594±4.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UN CIL_0004UN_0002 CGP 18:34330847-34373415

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0048500 IEA signal recognition particle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282999 SRP19-002 protein_coding Homo_sapiens 4.00001e-41 172
ENST00000445150 SRP19-005 protein_coding Homo_sapiens 4.00001e-41 172
ENST00000503445 CTC-487M23.8-002 processed_transcript Homo_sapiens 1.99993e-41 172
ENST00000505459 SRP19-001 protein_coding Homo_sapiens 9.99995e-41 172
ENST00000506997 CTC-487M23.8-001 nonsense_mediated_decay Homo_sapiens 8.00001e-41 172
ENST00000512790 CTC-487M23.8-004 processed_transcript Homo_sapiens 8.99998e-41 172
ENST00000515463 SRP19-008 protein_coding Homo_sapiens 0 326
ENST00000515755 SRP19-003 retained_intron Homo_sapiens 3.00004e-41 172
ENST00000621420 SRP19-201 protein_coding Homo_sapiens 0 494

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