C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072576 Srp19-001 ENSMUSG00000014504 10090 + 18:34331145-34336599 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072576
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072576 6.175±0.45 4.173±0.00 24.428±2.51 15.540±7.28 4.272±1.08 4.947±0.75 8.410±0.64 5.600±0.64 22.728±20.58 5.034±0.66 18.031±1.54 5.271±1.94 29.288±15.26 10.231±4.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UN CIL_0004UN_0002 CGP 18:34330847-34373415

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0048500 IEA signal recognition particle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282999 SRP19-002 protein_coding Homo_sapiens 0 396
ENST00000445150 SRP19-005 protein_coding Homo_sapiens 0 405
ENST00000503445 CTC-487M23.8-002 processed_transcript Homo_sapiens 0 257
ENST00000505459 SRP19-001 protein_coding Homo_sapiens 0 577
ENST00000506997 CTC-487M23.8-001 nonsense_mediated_decay Homo_sapiens 8.00001e-41 172
ENST00000512790 CTC-487M23.8-004 processed_transcript Homo_sapiens 0 401
ENST00000515463 SRP19-008 protein_coding Homo_sapiens 0.0000000000007 79
ENST00000515755 SRP19-003 retained_intron Homo_sapiens 0 255
ENST00000621420 SRP19-201 protein_coding Homo_sapiens 7.00005e-41 172

Loading