C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XX, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108856 Col20a1-001 ENSMUSG00000016356 10090 + 2:180986535-181017540 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000108856
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000108856 1.114±0.38 2.067±0.05 0.511±0.24 0.635±0.27 1.645±0.79 0.301±0.15 0.231±0.11 1.270±0.43 2.487±1.24 1.720±1.89 5.804±2.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045B CIL_00045B_0002 CGP 2:180967225-181017540
CIL_00010A CIL_00010A_0002 CGP 2:180986535-181043546

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005576 IEA extracellular region
GO:0005581 IEA collagen trimer
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358894 COL20A1-006 protein_coding Homo_sapiens 0 2266
ENST00000422202 COL20A1-001 protein_coding Homo_sapiens 0 1982
ENST00000479501 COL20A1-005 retained_intron Homo_sapiens 0 1877

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