C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PTPRF interacting protein, binding protein 1 (liprin beta 1)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000110841 PPFIBP1 9606 + 12:27523431-27695564 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000228425 PPFIBP1-001 27524256-27695564 protein_coding
  ENST00000318304 PPFIBP1-007 27524206-27695564 protein_coding
  ENST00000534917 PPFIBP1-011 27654386-27657123 retained_intron
  ENST00000535047 PPFIBP1-006 27524220-27647977 protein_coding
  ENST00000535575 PPFIBP1-010 27538123-27635104 protein_coding
  ENST00000537261 PPFIBP1-016 27660934-27676557 protein_coding
  ENST00000537927 PPFIBP1-003 27524182-27695563 protein_coding
  ENST00000538433 PPFIBP1-009 27523431-27650052 protein_coding
  ENST00000539326 PPFIBP1-012 27682624-27693127 protein_coding
  ENST00000540114 PPFIBP1-002 27524173-27691784 protein_coding
  ENST00000540256 PPFIBP1-013 27688189-27689203 retained_intron
  ENST00000540503 PPFIBP1-017 27679800-27682655 retained_intron
  ENST00000541633 PPFIBP1-014 27524174-27584418 processed_transcript
  ENST00000542187 PPFIBP1-015 27599348-27647789 protein_coding
  ENST00000542629 PPFIBP1-008 27524224-27692882 protein_coding
  ENST00000545334 PPFIBP1-005 27524158-27637319 protein_coding
  ENST00000545381 PPFIBP1-004 27524142-27658848 non_stop_decay
  ENST00000619325 PPFIBP1-018 27676428-27677992 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000228425ENST00000318304ENST00000535047ENST00000537261ENST00000537927ENST00000539326ENST00000541633ENST00000542629ENST00000545381
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000228425 4.393±0.00 2.199±0.00 1.593±0.00 1.422±0.00 4.746±0.00 1.754±0.60 6.495±3.65 2.346±1.33 2.405±0.56 5.080±1.88 0.774±0.02 4.527±1.91 3.701±0.33 1.414±0.32
ENST00000318304 N/A N/A N/A 2.151±0.59 1.054±0.00 N/A 15.163±0.00 1.503±0.72 N/A 2.048±0.00 N/A 1.905±0.00 N/A 0.571±0.00
ENST00000535047 N/A N/A 12.153±0.00 7.052±0.00 9.798±0.00 8.021±0.00 29.027±0.00 N/A 12.069±0.00 13.906±0.00 N/A 17.446±0.00 N/A N/A
ENST00000537261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.936±0.00 N/A N/A N/A
ENST00000537927 N/A N/A N/A 1.413±0.34 1.190±0.00 N/A 4.249±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000539326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.489±0.00 15.565±0.00 4.931±0.00
ENST00000541633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.609±0.00 N/A N/A N/A
ENST00000542629 3.246±0.00 N/A N/A 1.496±0.00 4.051±0.00 2.672±0.32 N/A 2.707±0.00 4.031±0.00 4.930±0.00 N/A 4.756±0.54 5.191±0.00 1.383±0.00
ENST00000545381 N/A N/A 6.655±0.00 N/A 6.036±0.00 N/A 12.768±0.00 4.674±0.00 10.626±0.00 N/A N/A 12.856±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056H CIL_00056H_0001 CGP 12:27466810-27695564

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005886 NAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0007155 TAS cell adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0008907 IEA integrase activity
GO:0015074 IEA DNA integration
GO:0048786 IEA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020236 PPFIBP1 (1 of 2) PTPRF interacting protein, binding protein 1 (liprin beta 1) protein_coding Danio_rerio
ENSDARG00000045749 PPFIBP1 (2 of 2) PTPRF interacting protein, binding protein 1 (liprin beta 1) protein_coding Danio_rerio
ENSMUSG00000016487 Ppfibp1 PTPRF interacting protein, binding protein 1 (liprin beta 1) protein_coding Mus_musculus

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