C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PTPRF interacting protein, binding protein 1 (liprin beta 1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111623 Ppfibp1-002 ENSMUSG00000016487 10090 + 6:146888589-147032025 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyMuscleOvaryPlacentaTestisENSMUST00000111623
Transcript ID Adipose Bladder Brain Breast Heart Kidney Muscle Ovary Placenta Testis
ENSMUST00000111623 4.593±0.00 5.986±0.70 2.898±3.18 6.222±1.53 3.477±1.72 3.373±1.14 1.041±0.39 8.226±0.65 5.890±0.08 2.363±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056H CIL_00056H_0002 CGP 6:146850104-147032025

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005925 IEA focal adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0008150 ND biological_process
GO:0048786 IEA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228425 PPFIBP1-001 protein_coding Homo_sapiens 0 1720
ENST00000318304 PPFIBP1-007 protein_coding Homo_sapiens 0 2069
ENST00000535047 PPFIBP1-006 protein_coding Homo_sapiens 0 676
ENST00000535575 PPFIBP1-010 protein_coding Homo_sapiens 0 366
ENST00000537927 PPFIBP1-003 protein_coding Homo_sapiens 0 2069
ENST00000538433 PPFIBP1-009 protein_coding Homo_sapiens 0 350
ENST00000539326 PPFIBP1-012 protein_coding Homo_sapiens 0 813
ENST00000540114 PPFIBP1-002 protein_coding Homo_sapiens 0 1674
ENST00000540256 PPFIBP1-013 retained_intron Homo_sapiens 0 409
ENST00000540503 PPFIBP1-017 retained_intron Homo_sapiens 0 523
ENST00000542187 PPFIBP1-015 protein_coding Homo_sapiens 0 586
ENST00000542629 PPFIBP1-008 protein_coding Homo_sapiens 0 2061
ENST00000545069 RP11-582E3.4-001 unprocessed_pseudogene Homo_sapiens 0 837
ENST00000545334 PPFIBP1-005 protein_coding Homo_sapiens 0 375
ENST00000545381 PPFIBP1-004 non_stop_decay Homo_sapiens 0 1083
ENST00000619325 PPFIBP1-018 protein_coding Homo_sapiens 5e-33 147

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