C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PTPRF interacting protein, binding protein 1 (liprin beta 1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000016631 Ppfibp1-001 ENSMUSG00000016487 10090 + 6:146888487-147032025 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016631
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016631 12.429±2.13 5.388±0.66 11.954±4.82 2.875±0.25 5.036±0.83 4.628±1.22 4.841±1.17 8.264±2.78 3.825±1.17 15.941±4.82 1.570±0.71 12.105±4.03 21.637±8.03 4.372±1.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056H CIL_00056H_0002 CGP 6:146850104-147032025

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0008150 ND biological_process
GO:0048786 IEA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228425 PPFIBP1-001 protein_coding Homo_sapiens 0 1720
ENST00000318304 PPFIBP1-007 protein_coding Homo_sapiens 0 2158
ENST00000535047 PPFIBP1-006 protein_coding Homo_sapiens 0 676
ENST00000535575 PPFIBP1-010 protein_coding Homo_sapiens 0 366
ENST00000537927 PPFIBP1-003 protein_coding Homo_sapiens 0 2158
ENST00000538433 PPFIBP1-009 protein_coding Homo_sapiens 0 350
ENST00000539326 PPFIBP1-012 protein_coding Homo_sapiens 0 813
ENST00000540114 PPFIBP1-002 protein_coding Homo_sapiens 0 1762
ENST00000540256 PPFIBP1-013 retained_intron Homo_sapiens 0 409
ENST00000540503 PPFIBP1-017 retained_intron Homo_sapiens 0 523
ENST00000542187 PPFIBP1-015 protein_coding Homo_sapiens 0 586
ENST00000542629 PPFIBP1-008 protein_coding Homo_sapiens 0 3094
ENST00000545069 RP11-582E3.4-001 unprocessed_pseudogene Homo_sapiens 0 837
ENST00000545334 PPFIBP1-005 protein_coding Homo_sapiens 0 375
ENST00000545381 PPFIBP1-004 non_stop_decay Homo_sapiens 0 1035
ENST00000619325 PPFIBP1-018 protein_coding Homo_sapiens 5e-33 147

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