C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017428 Psmd11 10090 + 11:80428615-80473248 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017572 Psmd11-001 80428625-80473248 protein_coding
  ENSMUST00000125591 Psmd11-007 80462615-80471641 nonsense_mediated_decay
  ENSMUST00000129500 Psmd11-005 80460709-80471714 protein_coding
  ENSMUST00000147898 Psmd11-002 80428644-80472306 retained_intron
  ENSMUST00000148895 Psmd11-008 80456368-80471875 protein_coding
  ENSMUST00000172615 Psmd11-011 80428646-80445959 nonsense_mediated_decay
  ENSMUST00000172641 Psmd11-003 80428615-80434538 retained_intron
  ENSMUST00000172773 Psmd11-014 80428665-80460691 nonsense_mediated_decay
  ENSMUST00000172847 Psmd11-013 80428686-80471539 nonsense_mediated_decay
  ENSMUST00000173060 Psmd11-010 80428690-80456423 nonsense_mediated_decay
  ENSMUST00000173186 Psmd11-015 80428686-80456242 nonsense_mediated_decay
  ENSMUST00000173565 Psmd11-012 80429887-80456427 protein_coding
  ENSMUST00000173797 Psmd11-006 80462611-80473248 protein_coding
  ENSMUST00000173938 Psmd11-004 80428623-80471909 protein_coding
  ENSMUST00000174743 Psmd11-009 80428686-80469882 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017572ENSMUST00000148895ENSMUST00000172615ENSMUST00000173938ENSMUST00000174743
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017572 18.450±2.76 8.554±1.65 20.554±0.12 16.271±9.11 17.252±2.11 11.790±2.67 18.466±1.01 19.397±0.59 24.606±4.40 17.309±1.02 21.415±1.21 21.726±6.41 14.824±8.12 7.254±3.53
ENSMUST00000148895 N/A N/A N/A 27.531±0.00 N/A N/A N/A N/A N/A N/A N/A 36.482±0.00 46.061±16.10 28.441±0.00
ENSMUST00000172615 N/A N/A N/A N/A 31.998±0.00 N/A N/A N/A N/A N/A N/A 28.011±0.00 N/A N/A
ENSMUST00000173938 11.995±2.27 8.374±1.19 13.465±1.22 7.890±2.21 8.860±0.97 9.706±2.62 7.599±0.72 8.911±2.13 19.527±9.78 8.547±0.50 10.665±1.25 10.265±2.64 20.208±7.23 18.360±5.90
ENSMUST00000174743 12.948±0.00 N/A N/A N/A 34.847±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VN CIL_0000VN_0002 CGP 11:80383279-80473248
CIL_0005RM CIL_0005RM_0004 CGP 11:80428615-80481184

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005838 IDA proteasome regulatory particle
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0016020 IEA membrane
GO:0022624 IDA proteasome accessory complex
GO:0043248 ISS proteasome assembly
GO:0048863 ISS stem cell differentiation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005134 psmd11b proteasome (prosome, macropain) 216S subunit, non-ATPase, 11b protein_coding Danio_rerio
ENSDARG00000060150 psmd11a proteasome (prosome, macropain) 216S subunit, non-ATPase, 11a protein_coding Danio_rerio
ENSG00000108671 PSMD11 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 protein_coding Homo_sapiens

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