C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000017572 Psmd11-001 ENSMUSG00000017428 10090 + 11:80428625-80473248 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017572
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017572 18.450±2.76 8.554±1.65 20.554±0.12 16.271±9.11 17.252±2.11 11.790±2.67 18.466±1.01 19.397±0.59 24.606±4.40 17.309±1.02 21.415±1.21 21.726±6.41 14.824±8.12 7.254±3.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VN CIL_0000VN_0002 CGP 11:80383279-80473248
CIL_0005RM CIL_0005RM_0004 CGP 11:80428615-80481184

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005838 IDA proteasome regulatory particle
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0016020 IEA membrane
GO:0022624 IDA proteasome accessory complex
GO:0043248 ISS proteasome assembly
GO:0048863 ISS stem cell differentiation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261712 PSMD11-001 protein_coding Homo_sapiens 0 2769
ENST00000457654 PSMD11-004 protein_coding Homo_sapiens 0 2025
ENST00000469475 PSMD11-003 retained_intron Homo_sapiens 0 571
ENST00000481992 PSMD11-005 retained_intron Homo_sapiens 0 315
ENST00000493026 PSMD11-002 retained_intron Homo_sapiens 0 342
ENST00000578213 PSMD11-007 protein_coding Homo_sapiens 0 505
ENST00000578397 PSMD11-006 retained_intron Homo_sapiens 0 1447
ENST00000579451 PSMD11-008 protein_coding Homo_sapiens 0 512
ENST00000580904 PSMD11-009 protein_coding Homo_sapiens 0 305
ENST00000584340 PSMD11-010 nonsense_mediated_decay Homo_sapiens 0 399
ENST00000585265 PSMD11-011 retained_intron Homo_sapiens 0 521

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