C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173938 Psmd11-004 ENSMUSG00000017428 10090 + 11:80428623-80471909 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000173938
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000173938 11.995±2.27 8.374±1.19 13.465±1.22 7.890±2.21 8.860±0.97 9.706±2.62 7.599±0.72 8.911±2.13 19.527±9.78 8.547±0.50 10.665±1.25 10.265±2.64 20.208±7.23 18.360±5.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VN CIL_0000VN_0002 CGP 11:80383279-80473248
CIL_0005RM CIL_0005RM_0004 CGP 11:80428615-80481184

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005838 IDA proteasome regulatory particle
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0022624 IDA proteasome accessory complex
GO:0043248 ISS proteasome assembly
GO:0048863 ISS stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261712 PSMD11-001 protein_coding Homo_sapiens 0 2028
ENST00000457654 PSMD11-004 protein_coding Homo_sapiens 0 2375
ENST00000469475 PSMD11-003 retained_intron Homo_sapiens 0 315
ENST00000481992 PSMD11-005 retained_intron Homo_sapiens 0 315
ENST00000493026 PSMD11-002 retained_intron Homo_sapiens 0 662
ENST00000578213 PSMD11-007 protein_coding Homo_sapiens 0 505
ENST00000578397 PSMD11-006 retained_intron Homo_sapiens 0 1447
ENST00000579451 PSMD11-008 protein_coding Homo_sapiens 0 512
ENST00000580904 PSMD11-009 protein_coding Homo_sapiens 0 305
ENST00000584340 PSMD11-010 nonsense_mediated_decay Homo_sapiens 0 399
ENST00000585265 PSMD11-011 retained_intron Homo_sapiens 0 261

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