C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB5C, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107364 Rab5c-001 ENSMUSG00000019173 10090 - 11:100715009-100738215 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107364
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107364 88.161±27.82 93.874±9.16 31.869±7.81 39.149±14.96 77.036±15.52 109.274±24.20 10.543±5.40 133.891±43.55 46.585±30.43 75.595±7.27 12.190±3.38 87.034±49.08 36.013±16.69 16.462±1.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002IY CIL_0002IY_0002 CGP 11:100713850-100738215
CIL_0002J1 CIL_0002J1_0002 CGP 11:100715009-100759942

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 TAS GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005768 IEA endosome
GO:0005886 IEA plasma membrane
GO:0006184 TAS GTP catabolic process
GO:0007032 IDA endosome organization
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0019003 ISS GDP binding
GO:0030100 IDA regulation of endocytosis
GO:0030139 IDA endocytic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000346213 RAB5C-001 protein_coding Homo_sapiens 0 1858
ENST00000360299 RAB5B-001 protein_coding Homo_sapiens 0 436
ENST00000393860 RAB5C-201 protein_coding Homo_sapiens 0 1729
ENST00000448789 RAB5B-003 protein_coding Homo_sapiens 0 233
ENST00000546810 RAB5B-008 retained_intron Homo_sapiens 0 233
ENST00000546881 RAB5C-007 retained_intron Homo_sapiens 0 579
ENST00000547517 RAB5C-002 protein_coding Homo_sapiens 0 1103
ENST00000548068 RAB5B-005 protein_coding Homo_sapiens 0 241
ENST00000549505 RAB5B-002 nonsense_mediated_decay Homo_sapiens 1e-21 110
ENST00000550013 RAB5C-003 retained_intron Homo_sapiens 0 427
ENST00000550406 RAB5C-008 protein_coding Homo_sapiens 0 372
ENST00000550504 RAB5C-004 protein_coding Homo_sapiens 0 446
ENST00000551338 RAB5C-006 protein_coding Homo_sapiens 0 473
ENST00000551459 RAB5B-007 protein_coding Homo_sapiens 0 228
ENST00000552162 RAB5C-005 protein_coding Homo_sapiens 0 590
ENST00000553116 RAB5B-004 protein_coding Homo_sapiens 0 436
ENST00000585562 CTD-2132N18.3-003 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000592248 CTD-2132N18.3-002 nonsense_mediated_decay Homo_sapiens 0 658
ENST00000592574 CTD-2132N18.3-001 protein_coding Homo_sapiens 0 706

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