C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: histocompatibility 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019188 H13 10090 + 2:152669461-152708670 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079247 H13-003 152669534-152704128 protein_coding
  ENSMUST00000089059 H13-002 152669488-152705036 protein_coding
  ENSMUST00000109825 H13-006 152669488-152686701 protein_coding
  ENSMUST00000125366 H13-001 152669461-152708670 protein_coding
  ENSMUST00000129439 H13-004 152691839-152696241 retained_intron
  ENSMUST00000148156 H13-005 152669486-152683441 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079247ENSMUST00000089059ENSMUST00000109825ENSMUST00000125366ENSMUST00000148156
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079247 N/A 70.563±0.63 N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.521±0.00 N/A N/A
ENSMUST00000089059 31.440±10.97 44.295±9.29 20.018±0.35 33.049±12.43 40.499±6.42 30.838±5.54 11.852±3.36 36.094±6.40 23.534±8.03 32.229±4.73 11.991±0.94 47.816±10.20 56.716±20.25 32.254±10.70
ENSMUST00000109825 N/A 116.356±29.50 N/A N/A 41.009±0.00 47.622±10.04 N/A N/A N/A 15.940±0.00 N/A 91.806±39.51 N/A N/A
ENSMUST00000125366 5.950±0.99 10.608±0.73 4.800±0.02 6.717±3.28 5.542±1.14 5.893±0.91 1.513±0.25 3.888±1.41 3.100±0.86 5.380±0.82 1.704±0.35 12.366±1.08 4.148±1.46 2.104±0.00
ENSMUST00000148156 N/A N/A 4.235±1.13 10.945±6.14 N/A N/A 1.070±0.00 N/A 3.139±0.40 N/A N/A 7.728±0.33 N/A 1.054±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0002 VISTA 2:152099091-152699726
CIL_0008K5 CIL_0008K5_0002 VISTA 2:152434876-153035572
CIL_00089Z CIL_00089Z_0002 VISTA 2:152488201-153091382
CIL_0008N4 CIL_0008N4_0002 VISTA 2:152517372-153118197
CIL_0001A0 CIL_0001A0_0002 CGP 2:152626951-152708670

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004190 IEA aspartic-type endopeptidase activity
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005791 IEA rough endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0006508 IEA proteolysis
GO:0008233 ISS peptidase activity
GO:0009986 IDA cell surface
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0033619 ISS membrane protein proteolysis
GO:0042500 IEA aspartic endopeptidase activity, intramembrane cleaving
GO:0042803 ISS protein homodimerization activity
GO:0071458 ISS integral component of cytoplasmic side of endoplasmic reticulum membrane
GO:0071556 ISS integral component of lumenal side of endoplasmic reticulum membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037846 hm13 histocompatibility (minor) 13 protein_coding Danio_rerio
ENSG00000101294 HM13 histocompatibility (minor) 13 protein_coding Homo_sapiens

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