C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histocompatibility 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125366 H13-001 ENSMUSG00000019188 10090 + 2:152669461-152708670 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000125366
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000125366 5.950±0.99 10.608±0.73 4.800±0.02 6.717±3.28 5.542±1.14 5.893±0.91 1.513±0.25 3.888±1.41 3.100±0.86 5.380±0.82 1.704±0.35 12.366±1.08 4.148±1.46 2.104±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0002 VISTA 2:152099091-152699726
CIL_0008K5 CIL_0008K5_0002 VISTA 2:152434876-153035572
CIL_00089Z CIL_00089Z_0002 VISTA 2:152488201-153091382
CIL_0008N4 CIL_0008N4_0002 VISTA 2:152517372-153118197
CIL_0001A0 CIL_0001A0_0002 CGP 2:152626951-152708670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005886 IEA plasma membrane
GO:0008233 ISS peptidase activity
GO:0009986 IDA cell surface
GO:0033619 ISS membrane protein proteolysis
GO:0042803 ISS protein homodimerization activity
GO:0071458 ISS integral component of cytoplasmic side of endoplasmic reticulum membrane
GO:0071556 ISS integral component of lumenal side of endoplasmic reticulum membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335574 HM13-009 protein_coding Homo_sapiens 0 1587
ENST00000340852 HM13-011 protein_coding Homo_sapiens 0 1779
ENST00000344042 HM13-014 protein_coding Homo_sapiens 0 817
ENST00000398174 HM13-012 protein_coding Homo_sapiens 0 1587
ENST00000460225 HM13-018 processed_transcript Homo_sapiens 0 327
ENST00000460389 HM13-002 processed_transcript Homo_sapiens 0 433
ENST00000464173 HM13-010 processed_transcript Homo_sapiens 0 339
ENST00000464661 HM13-026 processed_transcript Homo_sapiens 0 492
ENST00000466766 HM13-015 processed_transcript Homo_sapiens 0 270
ENST00000468559 HM13-024 processed_transcript Homo_sapiens 0 313
ENST00000469097 HM13-006 processed_transcript Homo_sapiens 0 706
ENST00000469126 HM13-019 processed_transcript Homo_sapiens 0 518
ENST00000472128 HM13-008 processed_transcript Homo_sapiens 0 725
ENST00000474466 HM13-023 processed_transcript Homo_sapiens 0 385
ENST00000483310 HM13-001 processed_transcript Homo_sapiens 0 701
ENST00000487964 HM13-021 processed_transcript Homo_sapiens 0 780
ENST00000492709 HM13-020 processed_transcript Homo_sapiens 0 1003
ENST00000494153 HM13-004 processed_transcript Homo_sapiens 0 575
ENST00000496438 HM13-017 processed_transcript Homo_sapiens 0 584
ENST00000498035 HM13-013 protein_coding Homo_sapiens 0 621
ENST00000619859 HM13-027 protein_coding Homo_sapiens 0 189

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