Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	LIM homeobox protein 9
ENSMUST00000112026	Lhx9-005	ENSMUSG00000019230	10090	-	1:138830944-138842429	protein_coding

Expression Patterns

Transcript ID	Breast	Liver	Ovary	Placenta	Testis
ENSMUST00000112026	0.048±0.00	0.036±0.03	2.183±0.72	0.004±0.00	0.147±0.06

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0007N3	CIL_0007N3_0002	UCNEbase	1:138385353-139100523
CIL_00055T	CIL_00055T_0002	CGP	1:138483837-138848576
CIL_00055W	CIL_00055W_0002	CGP	1:138825186-138856854

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0003714	ISS	transcription corepressor activity
GO:0005515	IPI	protein binding
GO:0005634	IEA	nucleus
GO:0008045	ISS	motor neuron axon guidance
GO:0008270	IEA	zinc ion binding
GO:0008283	IMP	cell proliferation
GO:0008584	IMP	male gonad development
GO:0008585	IMP	female gonad development
GO:0035262	IMP	gonad morphogenesis
GO:0043565	IEA	sequence-specific DNA binding
GO:0045892	ISS	negative regulation of transcription, DNA-templated

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSDART00000054807	lhx9-001	protein_coding	Danio_rerio	0	918
ENST00000367387	LHX9-004	protein_coding	Homo_sapiens	0	2285
ENST00000367388	LHX9-005	protein_coding	Homo_sapiens	0	189
ENST00000367390	LHX9-001	protein_coding	Homo_sapiens	0	2065
ENST00000367391	LHX9-003	protein_coding	Homo_sapiens	0	1336
ENST00000373615	LHX2-001	protein_coding	Homo_sapiens	0	305
ENST00000446480	LHX2-002	protein_coding	Homo_sapiens	0	217
ENST00000475727	LHX9-006	protein_coding	Homo_sapiens	1e-31	139
ENST00000560961	LHX2-004	protein_coding	Homo_sapiens	0	305
ENST00000561173	LHX9-007	protein_coding	Homo_sapiens	0	1334
ENST00000606127	LHX9-009	protein_coding	Homo_sapiens	2.94273e-44	182

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