C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox protein 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112030 Lhx9-004 ENSMUSG00000019230 10090 - 1:138827997-138848576 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartLiverOvaryPlacentaTestisENSMUST00000112030
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Liver Ovary Placenta Testis
ENSMUST00000112030 0.051±0.00 0.076±0.03 0.011±0.01 8.277±5.41 0.040±0.00 0.019±0.00 0.065±0.07 1.833±0.83 0.013±0.01 0.346±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N3 CIL_0007N3_0002 UCNEbase 1:138385353-139100523
CIL_00055T CIL_00055T_0002 CGP 1:138483837-138848576
CIL_00055W CIL_00055W_0002 CGP 1:138825186-138856854

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003714 ISS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0008045 ISS motor neuron axon guidance
GO:0008270 IEA zinc ion binding
GO:0008283 IMP cell proliferation
GO:0008584 IMP male gonad development
GO:0008585 IMP female gonad development
GO:0035262 IMP gonad morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000079556 lhx9-201 protein_coding Danio_rerio 0 785
ENST00000367387 LHX9-004 protein_coding Homo_sapiens 0 1336
ENST00000367388 LHX9-005 protein_coding Homo_sapiens 0 193
ENST00000367390 LHX9-001 protein_coding Homo_sapiens 0 1387
ENST00000367391 LHX9-003 protein_coding Homo_sapiens 0 1681
ENST00000373615 LHX2-001 protein_coding Homo_sapiens 0 305
ENST00000446480 LHX2-002 protein_coding Homo_sapiens 0 217
ENST00000475727 LHX9-006 protein_coding Homo_sapiens 1e-31 139
ENST00000560961 LHX2-004 protein_coding Homo_sapiens 0 305
ENST00000561173 LHX9-007 protein_coding Homo_sapiens 0 1628
ENST00000606127 LHX9-009 protein_coding Homo_sapiens 0 241

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