C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB1, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163483 Rab1-201 ENSMUSG00000020149 10090 + 11:20201602-20226856 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000163483
Transcript ID Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000163483 41.951±0.00 30.469±14.34 14.239±0.00 20.408±0.00 5.888±1.24 41.834±4.17 63.399±28.53 5.065±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ON CIL_0004ON_0002 CGP 11:20201432-20249429

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 ISS autophagic vacuole assembly
GO:0003924 ISS GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005768 IEA endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0006184 ISS GTP catabolic process
GO:0006886 TAS intracellular protein transport
GO:0006888 ISA:ISS ER to Golgi vesicle-mediated transport
GO:0006897 ISS endocytosis
GO:0006914 ISS autophagy
GO:0007030 IEA Golgi organization
GO:0007264 IEA small GTPase mediated signal transduction
GO:0016020 IEA membrane
GO:0016477 IMP cell migration
GO:0019068 IEA virion assembly
GO:0030252 ISS growth hormone secretion
GO:0032402 IMP melanosome transport
GO:0034446 IMP substrate adhesion-dependent cell spreading
GO:0042470 IDA melanosome
GO:0042742 ISS defense response to bacterium
GO:0047496 ISS vesicle transport along microtubule
GO:0070062 IEA extracellular vesicular exosome
GO:0072606 ISS interleukin-8 secretion
GO:0090110 IEA cargo loading into COPII-coated vesicle
GO:1903020 IEA positive regulation of glycoprotein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000043002 rab1a-001 protein_coding Danio_rerio 0 538
ENST00000260569 CEP68-002 protein_coding Homo_sapiens 3.9937e-43 182
ENST00000342609 AC067945.3-001 processed_pseudogene Homo_sapiens 0 798
ENST00000377990 CEP68-001 protein_coding Homo_sapiens 5.00264e-43 182
ENST00000398529 RAB1A-004 protein_coding Homo_sapiens 0 1356
ENST00000401856 RP1-263J7.2-001 processed_pseudogene Homo_sapiens 0 483
ENST00000409751 RAB1A-003 protein_coding Homo_sapiens 0 1735
ENST00000409784 RAB1A-001 protein_coding Homo_sapiens 0 2228
ENST00000409892 RAB1A-002 protein_coding Homo_sapiens 0 1716
ENST00000494188 RAB1A-005 processed_transcript Homo_sapiens 0 204

Loading